RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.409_1
         (242 letters)



>gnl|CDD|163018 TIGR02784, addA_alphas, double-strand break repair helicase AddA,
           alphaproteobacterial type.  AddAB, also called RexAB,
           substitutes for RecBCD in several bacterial lineages.
           These DNA recombination proteins act before synapse and
           are particularly important for DNA repair of
           double-stranded breaks by homologous recombination. The
           term AddAB is used broadly, with AddA homologous between
           the alphaproteobacteria (as modeled here) and the
           Firmicutes, while the partner AddB proteins show no
           strong homology across the two groups of species.
          Length = 1141

 Score =  229 bits (586), Expect = 5e-61
 Identities = 94/196 (47%), Positives = 135/196 (68%), Gaps = 1/196 (0%)

Query: 23  EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
            Q  ASDP  SAWVSANAGSGKTH+L QRV+RLLL    PS +LCLT+TKAAAAEM +RV
Sbjct: 2   RQARASDPKTSAWVSANAGSGKTHVLTQRVIRLLLNGVPPSKILCLTYTKAAAAEMQNRV 61

Query: 83  LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
            + +  W+ L D  L A +  ++GK+P+ + +++AR L    LETPGGLK+QTIHAFCE+
Sbjct: 62  FDRLGEWAVLDDAELRARLEALEGKRPDAAKLAEARRLFARALETPGGLKIQTIHAFCES 121

Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
           ++ QFPLEAN+  HF++ D+  +  L+ EA+++ LA +    ++ L  A   +LE + + 
Sbjct: 122 LLHQFPLEANVAGHFSVMDDRAAATLLAEARRALLAHVAAA-DDALADALATVLEAAGET 180

Query: 203 DIETLISDIISNRTAL 218
             E L+++I++ R  L
Sbjct: 181 GFEALLAEIVARRAHL 196



 Score = 26.2 bits (58), Expect = 8.8
 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 3/35 (8%)

Query: 15  DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILV 49
           DLI   ++  LLA  P   AWV      G  HILV
Sbjct: 366 DLI--ERTVALLA-RPGAGAWVHYKLDRGIDHILV 397


>gnl|CDD|163019 TIGR02785, addA_Gpos, recombination helicase AddA, Firmicutes type.
            AddAB, also called RexAB, substitutes for RecBCD in
           several bacterial lineages. These DNA recombination
           proteins act before synapse and are particularly
           important for DNA repair of double-stranded breaks by
           homologous recombination. The term AddAB is used
           broadly, with AddA homologous between the Firmicutes (as
           modeled here) and the alphaproteobacteria, while the
           partner AddB proteins show no strong homology across the
           two groups of species.
          Length = 1232

 Score = 77.8 bits (192), Expect = 2e-15
 Identities = 52/204 (25%), Positives = 86/204 (42%), Gaps = 32/204 (15%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
           VSA+AGSGKT +LV+R+++ +L       LL +T T AAA EM  R+ E           
Sbjct: 19  VSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEE----------- 67

Query: 96  ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
                + K   ++PN   + +   LL T         + T+H+FC  ++++     ++  
Sbjct: 68  ----ALQKALQQEPNSKHLRRQLALLNTA-------NISTLHSFCLKVIRKHYYLLDLDP 116

Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIISN 214
            F I  + +   LI+E             +    + F+E+ +  S D   + L  D+I  
Sbjct: 117 SFRILTDTEQLLLIKEVVDDVFEEEYYKED---NEGFFELTDNFSGDRSDDGL-RDLI-- 170

Query: 215 RTALKLIFFFFSYLWRRKIIEKSL 238
              LKL  F  S     K +    
Sbjct: 171 ---LKLYDFARSTPNPEKWLNNLA 191


>gnl|CDD|184388 PRK13909, PRK13909, putative recombination protein RecB;
           Provisional.
          Length = 910

 Score = 74.2 bits (183), Expect = 3e-14
 Identities = 52/167 (31%), Positives = 84/167 (50%), Gaps = 11/167 (6%)

Query: 38  ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
           A+AGSGKT  L  R L LL   A+PS +L LT TK AA EM  R+++ +       +E  
Sbjct: 5   ASAGSGKTFALSVRFLALLFKGANPSEILALTFTKKAANEMKERIIDTLLNLEKEKEESE 64

Query: 98  SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157
             E+ +  G    +  ++K   +    L +   LK+ TI AF + I+++F L   ++  F
Sbjct: 65  LNELEEKLGLSKEEL-LNKRDKVYQEFLNS--ELKISTIDAFFQKILRKFCLNLGLSPDF 121

Query: 158 AIAD---EEQSKKLIEEAKK----STLASIMLDNNEELKKAFYEILE 197
           +I +   EE ++K +    K      LA I    +++    F+E+LE
Sbjct: 122 SIKEDTKEELNEKFLSALSKEELLELLAFIKQCESKKNNS-FFELLE 167


>gnl|CDD|161956 TIGR00609, recB, exodeoxyribonuclease V, beta subunit.  All
           proteins in this family for which functions are known
           are DNA-DNA helicases that are used as part of an
           exonuclease-helicase complex (made up of RecBCD
           homologs) that function to generate substrates for the
           initiation of recombination and recombinational repair.
           This family is based on the phylogenomic analysis of JA
           Eisen (1999, Ph.D. Thesis, Stanford University).
          Length = 1087

 Score = 53.6 bits (129), Expect = 5e-08
 Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 3/113 (2%)

Query: 38  ANAGSGKTHILVQRVLRLLL--ANAHPSTLLCLTHTKAAAAEMSHRVLE-IITAWSHLSD 94
           A+AG+GKT  + Q  LRLLL         +L +T T AA  E+  R+   I  A   L  
Sbjct: 16  ASAGTGKTFTIAQLYLRLLLEGGPLTVEEILVVTFTNAATEELKTRIRGRIHQALRALKA 75

Query: 95  EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
            + S E+ +   +      + +A   L   L T     + TIH FC+ +++Q 
Sbjct: 76  ALTSQELPEPLKEAIQDEKVKQAITRLRNALATMDEAAIYTIHGFCQRMLEQH 128


>gnl|CDD|130147 TIGR01075, uvrD, DNA helicase II.  Designed to identify uvrD
           members of the uvrD/rep subfamily.
          Length = 715

 Score = 52.1 bits (125), Expect = 1e-07
 Identities = 35/147 (23%), Positives = 59/147 (40%), Gaps = 39/147 (26%)

Query: 30  PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
           P  +  V A AGSGKT +L  R+  LL + NA P +++ +T T  AAAEM HR+  ++  
Sbjct: 16  PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLGT 75

Query: 89  WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
                                                 +  G+ + T H     +++   
Sbjct: 76  --------------------------------------SARGMWIGTFHGLAHRLLRAHH 97

Query: 149 LEANITSHFAIADEEQSKKLIEEAKKS 175
           L+A +   F I D +   +L++   K+
Sbjct: 98  LDAGLPQDFQILDSDDQLRLLKRLIKA 124


>gnl|CDD|183307 PRK11773, uvrD, DNA-dependent helicase II; Provisional.
          Length = 721

 Score = 49.5 bits (119), Expect = 8e-07
 Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 1/58 (1%)

Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          P  +  V A AGSGKT +LV R+  L+ + NA P +++ +T T  AAAEM HR+ +++
Sbjct: 21 PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLL 78


>gnl|CDD|162191 TIGR01073, pcrA, ATP-dependent DNA helicase PcrA.  Designed to
          identify pcrA members of the uvrD/rep subfamily.
          Length = 726

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
          A AGSGKT +L  R+  L+   N  P  +L +T T  AA EM  RV +++
Sbjct: 24 AGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLL 73


>gnl|CDD|182930 PRK11054, helD, DNA helicase IV; Provisional.
          Length = 684

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 36  VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLE 84
           V A AGSGKT +LV R   LL    A P  +L L   + AA EM  R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRE 263


>gnl|CDD|130146 TIGR01074, rep, ATP-dependent DNA helicase Rep.  Designed to
           identify rep members of the uvrD/rep subfamily.
          Length = 664

 Score = 38.6 bits (90), Expect = 0.001
 Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 14/104 (13%)

Query: 36  VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLE---------- 84
           V A AGSGKT ++  ++  L+    +    +  +T T  AA EM  RV +          
Sbjct: 19  VLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLGKGEARGL 78

Query: 85  IITAWSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILE 126
            I+ +  L  +I+  E   + G K N S  D +    LL  + E
Sbjct: 79  TISTFHTLGLDIIKREYNAL-GYKSNFSLFDETDQLALLKELTE 121


>gnl|CDD|128763 smart00487, DEXDc, DEAD-like helicases superfamily. 
          Length = 201

 Score = 35.9 bits (83), Expect = 0.009
 Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 8/91 (8%)

Query: 41  GSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAE 100
           GSGKT   +   L  L         L L  T+  A + +  + +            +   
Sbjct: 34  GSGKTLAALLPALEALKRGKGKRV-LVLVPTRELAEQWAEELKK----LGPSLGLKVVGL 88

Query: 101 ITKIQGKKPNKSDMSKARHLLITILETPGGL 131
                 ++  +   S    +L+T   TPG L
Sbjct: 89  YGGDSKREQLRKLESGKTDILVT---TPGRL 116


>gnl|CDD|182801 PRK10876, recB, exonuclease V subunit beta; Provisional.
          Length = 1181

 Score = 34.6 bits (80), Expect = 0.026
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 9/60 (15%)

Query: 36 VSANAGSGKTHILVQRVLRLLL----ANAHPSTL-----LCLTHTKAAAAEMSHRVLEII 86
          + A+AG+GKT  +    LRLLL    + A P  L     L +T T+AA  E+  R+   I
Sbjct: 22 IEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEEILVVTFTEAATEELRGRIRSNI 81


>gnl|CDD|182838 PRK10919, PRK10919, ATP-dependent DNA helicase Rep; Provisional.
          Length = 672

 Score = 31.3 bits (71), Expect = 0.24
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
          V A AGSGKT ++  ++  L+    +    +  +T T  AA EM  RV
Sbjct: 20 VLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERV 67


>gnl|CDD|132401 TIGR03358, VI_chp_5, type VI secretion protein, VC_A0107 family.
           Work by Mougous, et al. (2006), describes IAHP-related
           loci as a type VI secretion system (PubMed:16763151).
           This protein family is associated with type VI secretion
           loci, although not treated explicitly by Mougous, et al.
          Length = 159

 Score = 28.8 bits (65), Expect = 1.3
 Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 182 LDNNEELKKAFYEILEISNDEDIETLISDIISN 214
           LDNN +L+K   E+L   + + +E L+S++ + 
Sbjct: 129 LDNNPDLRKLLQELL--KDKDLLEKLLSELGAK 159


>gnl|CDD|161832 TIGR00348, hsdR, type I site-specific deoxyribonuclease, HsdR
           family.  Members of this family are assumed to differ
           from each other in DNA site specificity.
          Length = 667

 Score = 28.5 bits (64), Expect = 1.5
 Identities = 20/100 (20%), Positives = 41/100 (41%), Gaps = 10/100 (10%)

Query: 94  DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
           D  L  E   +Q     + + S A  L   + +  GG+ + TI  F + + ++       
Sbjct: 306 DYQLMKEFQSLQKDCAERIE-SIA-ELKRLLEKDDGGIIITTIQKFDKKLKEEE------ 357

Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
              F + D ++   + +EA +S    +  +  + LK A +
Sbjct: 358 -EKFPV-DRKEVVVIFDEAHRSQYGELAKNLKKALKNASF 395


>gnl|CDD|178011 PLN02385, PLN02385, hydrolase; alpha/beta fold family protein.
          Length = 349

 Score = 27.8 bits (62), Expect = 2.6
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 8/56 (14%)

Query: 159 IADEEQSKKLIEEAKKSTLASIMLDNNEEL-KKAFYEILEISNDEDIETLISDIIS 213
           + D   SK L E+A  S       D   +L + A++ ILE   DE I  ++ DIIS
Sbjct: 292 VTDPSVSKFLYEKASSS-------DKKLKLYEDAYHSILEGEPDEMIFQVLDDIIS 340


>gnl|CDD|184801 PRK14715, PRK14715, DNA polymerase II large subunit; Provisional.
          Length = 1627

 Score = 27.9 bits (62), Expect = 2.8
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 7/55 (12%)

Query: 161 DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNR 215
           DEE+S+++  E        +  +  EE K  +YE+ E  N E  +  I ++I+ R
Sbjct: 287 DEEKSEEVKTE-------EVDEEFEEEEKGFYYELYEKVNIEANKKFIKEVIAGR 334


>gnl|CDD|128968 smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM.
           This superfamily contains MoaA, NifB, PqqE,
           coproporphyrinogen III oxidase, biotin synthase and MiaB
           families, and includes a representative in the
           eukaryotic elongator subunit, Elp-3. Some members of the
           family are methyltransferases.
          Length = 216

 Score = 27.4 bits (61), Expect = 3.4
 Identities = 18/98 (18%), Positives = 39/98 (39%), Gaps = 12/98 (12%)

Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL--ASIMLD- 183
           TP  L  + +    EAI +   L  ++           +++L+E  K++ +   S+ +  
Sbjct: 61  TPTLLSPEQLEELLEAIREILGLADDVEITIETRPGTLTEELLEALKEAGVNRVSLGVQS 120

Query: 184 -NNEELKKA--------FYEILEISNDEDIETLISDII 212
            ++E LK            E +E   +     + +D+I
Sbjct: 121 GSDEVLKAINRGHTVEDVLEAVEKLREAGPIKVSTDLI 158


>gnl|CDD|163254 TIGR03420, DnaA_homol_Hda, DnaA regulatory inactivator Hda.
          Members of this protein family are Hda (Homologous to
          DnaA). These proteins are about half the length of DnaA
          and homologous over length of Hda. In the model species
          Escherichia coli, the initiation of DNA replication
          requires DnaA bound to ATP rather than ADP; Hda helps
          facilitate the conversion of DnaA-ATP to DnaA-ADP.
          Length = 226

 Score = 26.8 bits (60), Expect = 5.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 23 EQLLASDPTRSAWVSANAGSGKTHIL 48
           QL A    R  ++   +GSGK+H+L
Sbjct: 30 RQLAAGKGDRFLYLWGESGSGKSHLL 55


>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
           ATP-binding protein.  Members of this family are the
           ATP-binding protein of a conserved four gene ABC
           transporter operon found next to ectoine unilization
           operons and ectoine biosynthesis operons. Ectoine is a
           compatible solute that protects enzymes from high
           osmolarity. It is released by some species in response
           to hypoosmotic shock, and it is taken up by a number of
           bacteria as a compatible solute or for consumption. This
           family shows strong sequence similiarity to a number of
           amino acid ABC transporter ATP-binding proteins.
          Length = 252

 Score = 26.7 bits (59), Expect = 5.7
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 48  LVQRVLRLL--LANAHPSTLLCLTHTKAAAAEMSHRVL 83
           LV  VL ++  LA+ H  T+L +TH    A E + RV 
Sbjct: 181 LVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVC 218


>gnl|CDD|152382 pfam11947, DUF3464, Protein of unknown function (DUF3464).  This
           family of proteins are functionally uncharacterized.
           This protein is found in bacteria and eukaryotes.
           Proteins in this family are typically between 137 to 196
           amino acids in length.
          Length = 149

 Score = 26.5 bits (59), Expect = 5.8
 Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 14/93 (15%)

Query: 161 DEEQSKKLIEEAKKST-LASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNR---- 215
                K+L  E K+S                   +  + S  +  E+ I  ++SNR    
Sbjct: 1   MASSRKRLPFEPKRSRKKGYKAARKAAVAASKDKQKKKKSKRKASESGIPKVVSNRMIRR 60

Query: 216 --------TALKLIFFFFSY-LWRRKIIEKSLW 239
                   TAL +  F  SY L  R II+   W
Sbjct: 61  IAFFSGIPTALGMAVFVVSYLLVSRGIIDVPPW 93


>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE.  This
           model describes FtsE, a member of the ABC transporter
           ATP-binding protein family. This protein, and its
           permease partner FtsX, localize to the division site. In
           a number of species, the ftsEX gene pair is located next
           to FtsY, the signal recognition particle-docking
           protein.
          Length = 214

 Score = 26.4 bits (59), Expect = 6.7
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 48  LVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEI 85
           L +R+L LL   N   +T++  TH  +    ++HRV+ +
Sbjct: 172 LSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIIL 210


>gnl|CDD|178475 PLN02887, PLN02887, hydrolase family protein.
          Length = 580

 Score = 26.4 bits (58), Expect = 6.8
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 8/48 (16%)

Query: 158 AIADEEQSKKLIEEAKKSTLAS--IMLDNNEELKKAFYEILEISNDED 203
           AI D E   ++++      LAS  + L N  E  KA  +++ +SNDED
Sbjct: 528 AIGDGENDIEMLQ------LASLGVALSNGAEKTKAVADVIGVSNDED 569


>gnl|CDD|180655 PRK06676, rpsA, 30S ribosomal protein S1; Reviewed.
          Length = 390

 Score = 26.4 bits (59), Expect = 6.8
 Identities = 25/127 (19%), Positives = 41/127 (32%), Gaps = 47/127 (37%)

Query: 79  SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL--KVQTI 136
           S R LE   AW  L ++    E+ +++  +                    GGL   V+ +
Sbjct: 86  SKRRLEAEKAWDKLEEKFEEGEVVEVKVTE-----------------VVKGGLVVDVEGV 128

Query: 137 HAFCEAIM---------QQF---PLEANIT-----------SHFAIADEEQSKKLIEEAK 173
             F  A +           F    LE  I            S  A+ +EE+        K
Sbjct: 129 RGFIPASLISTRFVEDFSDFKGKTLEVKIIELDPEKNRVILSRRAVVEEER-----AAKK 183

Query: 174 KSTLASI 180
           +  L+S+
Sbjct: 184 EELLSSL 190


>gnl|CDD|184380 PRK13897, PRK13897, type IV secretion system component VirD4;
           Provisional.
          Length = 606

 Score = 26.3 bits (58), Expect = 7.1
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 10/58 (17%)

Query: 159 IADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRT 216
           I D EQ K + EEA            N  L  + Y I   +N+ +   LIS ++ N+T
Sbjct: 442 IQDTEQLKGIYEEAGM----------NSFLSNSTYRITFAANNIETANLISQLVGNKT 489


>gnl|CDD|185423 PTZ00068, PTZ00068, 60S ribosomal protein L13a; Provisional.
          Length = 202

 Score = 25.8 bits (57), Expect = 9.8
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 160 ADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
             + + +K  +EA+K  LA +       LKK  Y
Sbjct: 168 KKKVKLRKAWKEARKKALAKLPKAIVAVLKKFGY 201


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.317    0.129    0.360 

Gapped
Lambda     K      H
   0.267   0.0793    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,763,099
Number of extensions: 228988
Number of successful extensions: 762
Number of sequences better than 10.0: 1
Number of HSP's gapped: 750
Number of HSP's successfully gapped: 57
Length of query: 242
Length of database: 5,994,473
Length adjustment: 91
Effective length of query: 151
Effective length of database: 4,028,145
Effective search space: 608249895
Effective search space used: 608249895
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.2 bits)