HHsearch alignment for GI: peg_410 and conserved domain: PRK11054
>PRK11054 helD DNA helicase IV; Provisional.
Probab=100.00 E-value=0 Score=416.57 Aligned_cols=136 Identities=28% Similarity=0.355 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECHHCCCHHHHHHHHHHHHHCC
Q ss_conf 99999999999999999986997758999999998315842489999986179899980710199999999999841002
Q 537021.9.peg.4 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204 (952)
Q Consensus 125 ~l~~~~~~~~~~y~~~k~~~~~ldf~Dl~~~a~~lL~~~~~~~~~~~~l~~~~~~ilVDEfQDT~~~Q~~il~~L~~~~~ 204 (952)
T Consensus 387 ~~l~l~~ply~aYe~~Lk~~~~IDFdDmI~~a~~ll~~~--------~~~~~~ryILVDEfQDiS~~Q~~Ll~aL~~~-- 456 (684)
T PRK11054 387 KRIKLMAPLLKAWKGALKAENAVDFSGLIHQAVVILEKG--------RFISPWKHILVDEFQDISPQRAALLEALRKQ-- 456 (684)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC--------CHHHCCCEEEEECCCCCCHHHHHHHHHHHHC--
T ss_conf 778999999999999998759988799999999998707--------1442376899876336999999999998733--
Q ss_pred CCCCCCCCCCEEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 46766676864999966656765424888478999999966521345765312006866688789999999997112100
Q 537021.9.peg.4 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284 (952)
Q Consensus 205 ~~~~~~~~~~~l~~VGD~kQSIY~FRGAd~~~~~~~~~~f~~~~~~~~~~~~~~~L~~N~RS~~~Ii~~~N~~f~~~~~~ 284 (952)
T Consensus 457 ------~~~~~LfaVGDD~QSIYrFrGAdi~~~~~F~~~F~~--------a~~~~L~~nYRs~~~I~~~An~fI~~Np~Q 522 (684)
T PRK11054 457 ------NSQTTLFAVGDDWQAIYRFSGADVSLTTAFHERFGE--------GTICHLDTTYRFNSRIGEVANRFIQQNPHQ 522 (684)
T ss_pred ------CCCCEEEEEECCCHHEEEECCCCHHHHHHHHHHCCC--------CEEEECCCCCCCCHHHHHHHHHHHHHCHHH
T ss_conf ------999759998067421011268884899989876799--------679978788888659999999999849574