HHsearch alignment for GI: peg_410 and conserved domain: TIGR01073
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA; InterPro: IPR005751 The DNA helicase PcrA is found mainly in Gram-positive bacteria and belongs to a superfamily of helicases, together with Rep and UvrD helicases from Escherichia coli. The action of the 3'5' bacterial DNA helicase is based upon two separate but coupled activities, ssDNA translocation and duplex destabilisation, and is driven by energy derived from the continuous ATP-binding and hydrolysis events that take place in the active-site cleft. The resulting conformational changes that accompany these events underpin the coupling process and allow the helicase to translocate along the DNA, destabilising the duplex and separating the two strands in an active process .; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=655.85 Aligned_cols=476 Identities=24% Similarity=0.308 Sum_probs=381.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999999999999999869977589999999983158424899999861798999807101999999999998410024
Q 537021.9.peg.4 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205 (952)
Q Consensus 126 l~~~~~~~~~~y~~~k~~~~~ldf~Dl~~~a~~lL~~~~~~~~~~~~l~~~~~~ilVDEfQDT~~~Q~~il~~L~~~~~~ 205 (952)
T Consensus 199 ~~~~va~VY~~YQ~~L~~n~~LDFDDLIm~t~~LF~~~P~---VL~yYq~kF~yilvDEYQDTN~AQY~lv~~La~~~~E 275 (811)
T TIGR01073 199 FEKVVAEVYAEYQKQLLRNNALDFDDLIMTTINLFQRVPD---VLEYYQRKFQYILVDEYQDTNRAQYTLVRLLASRGEE 275 (811)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH---HHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCC
T ss_conf 8889999999999998761478421277754898873179---9999884074677733444358999999986018887
Q ss_pred C----CCCCCCCCEEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 6----766676864999966656765424888478999999966521345765312006866688789999999997112
Q 537021.9.peg.4 206 G----KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281 (952)
Q Consensus 206 ~----~~~~~~~~~l~~VGD~kQSIY~FRGAd~~~~~~~~~~f~~~~~~~~~~~~~~~L~~N~RS~~~Ii~~~N~~f~~~ 281 (952)
T Consensus 276 ~~vdv~E~~~~~~nlcvVGDaDQSIY~wRGAdi~NIL~FEkDyp~rlld-GetA~~i~LEQNYRST~~IL~AAN~VI~~N 354 (811)
T TIGR01073 276 RQVDVSEADVRFRNLCVVGDADQSIYGWRGADITNILSFEKDYPNRLLD-GETATTILLEQNYRSTKNILQAANEVIEHN 354 (811)
T ss_pred CCCCCCCCCCCCCCEEEECCCCCCCHHHHCCHHHHHHHHHHCCCCCCCC-CCCCEEEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 6345553556866447872886550012010156332010013231126-763117763247521467999999998524
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 10012332212221223344788874365113444322334310111110001113333688899999999999983586
Q 537021.9.peg.4 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361 (952)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~I~~l~~~~~ 361 (952)
T Consensus 355 ~~R~pK~LWT~~~---------~G~~I~~--------------------------Y~A~~E~dEA~Fv~~~I~~l~~~~P 399 (811)
T TIGR01073 355 SNRKPKNLWTENS---------SGEKITY--------------------------YEADTERDEAQFVAGEIDKLRKNGP 399 (811)
T ss_pred CCCCCCCCCCCCC---------CCCCEEE--------------------------EECCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 7888973003488---------9960578--------------------------7248810178999999999874175
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHC
Q ss_conf 22125436878244689861531012248999998741697366048621123310522687688874813110245430
Q 537021.9.peg.4 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441 (952)
Q Consensus 362 ~~~~~~~r~~~~~diaVL~r~~~~~~~~~~~l~al~~~~~ip~~~~~~~~~~~~~~v~~l~a~l~~l~~p~~~~~~~~~L 441 (952)
T Consensus 400 --------~~~~~D~AiLYRTNAQSR~~EE~l----~k~n~pY~iVGG~kFYdRkEIkD~LAYLR~~~Np~D~~sL~RIi 467 (811)
T TIGR01073 400 --------ELKYGDFAILYRTNAQSRVFEETL----LKANIPYKIVGGLKFYDRKEIKDILAYLRVIANPDDDVSLERII 467 (811)
T ss_pred --------CHHHCCEEEEEECCCCCHHHHHHH----HHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf --------100137038872672007899999----86489806634610230577999999988861789883321012
Q ss_pred CCCCCCCCHHHHHHHHHH-CCCCCCHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHH
Q ss_conf 587747888899998730-12686578887643------11115899999999999998642199899999998503469
Q 537021.9.peg.4 442 KSPLFNFSEDDIFKICTQ-RHETETVYEYIQKF------ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514 (952)
Q Consensus 442 ~spl~g~~~~~l~~l~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 514 (952)
T Consensus 468 NvPKRGiG~~s~~~~~~~a~~~~iS~~~Ai~~~~~i~~~~~ks~~~~~~F~~~~~~l~~~~~~~~~~e~~~~vL~~SgY~ 547 (811)
T TIGR01073 468 NVPKRGIGASSLEKIRSYALELNISLFEAIGEIDEIGTLAAKSANALLQFAEMIENLRQQQEFLSVTEVVEEVLDKSGYR 547 (811)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHH
T ss_conf 38887644678999999998608888899878875023568999999999999999999860002889999985123407
Q ss_pred HHHHHCCCHH---HHHHHHHHHHHHHHHHHCC-------CCCHHHHHHHHHHCCCCCCCCC----CCCCCCCEEECHHHC
Q ss_conf 9998113523---8999999999999985205-------6898999998850100132112----357885303001221
Q 537021.9.peg.4 515 QQFISRFGNE---VIDVLDEFLNFTLRNEQNS-------YSSLQELISELEQYPPTIKRAH----SANHNEVRIMTVHTA 580 (952)
Q Consensus 515 ~~~~~~~~~~---~~~~l~~l~~~a~~~e~~~-------~~~l~~f~~~l~~~~~~~~~~~----~~~~d~V~imTiH~S 580 (952)
T Consensus 548 ~mL~~~~t~ea~~RlENl~E~~~v~~~Fe~~~~~Edpes~~~L~dFL~~~aL~~D~D~l~~~E~~~~Gdg~VtLMTLHaA 627 (811)
T TIGR01073 548 EMLKAEKTEEAQSRLENLDEFLSVTKEFEDESAEEDPESIKSLVDFLTDLALVSDLDDLEEEEEEAEGDGAVTLMTLHAA 627 (811)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCEEEEHHHHCC
T ss_conf 89974079234556899999999998453137766730033799999878765424433654011379964863134302
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 45677779981588776776544422234455566663123544457874779999999764444678878751146652
Q 537021.9.peg.4 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660 (952)
Q Consensus 581 KGLEfpvV~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ee~RLlYVAlTRAk~ 660 (952)
T Consensus 628 KGLEFPVVFL~GlEeG~FPh~RsL~--------------------------------~~d~~~lEEERRLAYVGITRA~~ 675 (811)
T TIGR01073 628 KGLEFPVVFLIGLEEGVFPHSRSLM--------------------------------EDDEKELEEERRLAYVGITRAEE 675 (811)
T ss_pred CCCCCCEEEECCCCCCCCHHHHHCC--------------------------------CCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 5677762565487655672134047--------------------------------67811356788888666554431
Q ss_pred EEEEEECCCCC---CCCCCCCCCCHHH
Q ss_conf 89998316777---7666543210688
Q 537021.9.peg.4 661 QLIICKHSNTS---NEKKSNQRTWYDM 684 (952)
Q Consensus 661 ~L~l~~~~~~~---~~~~~~~~~~~~~ 684 (952)
T Consensus 676 ~LyLT~A~~R~lfG~~~~~~PSRFl~E 702 (811)
T TIGR01073 676 ELYLTHATSRTLFGRIQMNPPSRFLNE 702 (811)
T ss_pred HHCCCCHHHHHHHCCCCCCCCCCCHHC
T ss_conf 000100334253223368987542330