HHsearch alignment for GI: peg_410 and conserved domain: TIGR01075

>TIGR01075 uvrD DNA helicase II; InterPro: IPR005753 The SOS response is required for efficient nucleotide excision repair (NER) of the major ultraviolet light (UV) induced DNA lesions. The expression of three NER genes, uvrA, uvrB, and uvrD, is upregulated as part of the SOS response. UvrD differs from the others in that it is not involved in lesion recognition but rather in promoting the post-incision steps of NER, including turnover of the UvrBC incision complex . The form of the UvrD helicase with optimal helicase activity is oligomeric with at least two sites for binding the DNA substrate, where one site contacts regions of the 3'-ssDNA tail that are distal from the single-stranded/double-stranded DNA junction.; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=100.00  E-value=0  Score=596.88  Aligned_cols=439  Identities=24%  Similarity=0.307  Sum_probs=361.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECHHCCCHHHHHHHHHHHHHCC
Q ss_conf             99999999999999999986997758999999998315842489999986179899980710199999999999841002
Q 537021.9.peg.4  125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF  204 (952)
Q Consensus       125 ~l~~~~~~~~~~y~~~k~~~~~ldf~Dl~~~a~~lL~~~~~~~~~~~~l~~~~~~ilVDEfQDT~~~Q~~il~~L~~~~~  204 (952)
T Consensus       165 ~~~~~~~~~Y~~Yq~~C~RaGlVDFAELLLRa~ELl~~~~~---~l~hY~~RF~~ILvDEFQDTN~iQYaw~rllAg---  238 (741)
T TIGR01075       165 PVERTWIKIYAEYQEACDRAGLVDFAELLLRAYELLRNKPH---ILQHYQERFKHILVDEFQDTNKIQYAWIRLLAG---  238 (741)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHH---HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCC---
T ss_conf             68999999999987530637734589999999997528958---999998761005432324500699999999608---


Q ss_pred             CCCCCCCCCCEEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             46766676864999966656765424888478999999966521345765312006866688789999999997112100
Q 537021.9.peg.4  205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA  284 (952)
Q Consensus       205 ~~~~~~~~~~~l~~VGD~kQSIY~FRGAd~~~~~~~~~~f~~~~~~~~~~~~~~~L~~N~RS~~~Ii~~~N~~f~~~~~~  284 (952)
T Consensus       239 -------~~~~V~~VGDDDQsIYgwRGA~veni~~fl~dF~~--------~~tirLEQNYRS~~nIL~AAN~lIanN~~R  303 (741)
T TIGR01075       239 -------ETGNVMIVGDDDQSIYGWRGAQVENIQKFLKDFPI--------AETIRLEQNYRSTANILAAANALIANNDER  303 (741)
T ss_pred             -------CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCC--------CCCEEECCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             -------99637988558742012457641888999974678--------885342003221788999988998528865


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             12332212221223344788874365113444322334310111110001113333688899999999999983586221
Q 537021.9.peg.4  285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS  364 (952)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~I~~l~~~~~~~~  364 (952)
T Consensus       304 lGK~LwT~g---------~~Ge~i~~--------------------------YsAfneLdEArFvv~~~~~w~~~GG---  345 (741)
T TIGR01075       304 LGKNLWTDG---------EVGEPISL--------------------------YSAFNELDEARFVVSRIKAWQREGG---  345 (741)
T ss_pred             CCCCEECCC---------CCCCCEEE--------------------------EECCCHHHHHHHHHHHHHHHHHCCC---
T ss_conf             675301345---------67870257--------------------------6513413789999999999986589---


Q ss_pred             CCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCC
Q ss_conf             25436878244689861531012248999998741697366048621123310522687688874813110245430587
Q 537021.9.peg.4  365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP  444 (952)
Q Consensus       365 ~~~~r~~~~~diaVL~r~~~~~~~~~~~l~al~~~~~ip~~~~~~~~~~~~~~v~~l~a~l~~l~~p~~~~~~~~~L~sp  444 (952)
T Consensus       346 -------~l~e~AvLYRsNAQSRv~Ee~L----~~~~iPYriYGG~RFFERqEIKdALaYLRL~~Nr~DDaAfeRViNtP  414 (741)
T TIGR01075       346 -------ALDEIAVLYRSNAQSRVLEEAL----LRASIPYRIYGGMRFFERQEIKDALAYLRLIANRNDDAAFERVINTP  414 (741)
T ss_pred             -------CCCCEEEEECCCHHHHHHHHHH----HHCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCHHCCEECCC
T ss_conf             -------6413656632552468999999----74489804307863256788999999998714887530320300488


Q ss_pred             CCCCCHHHHHHHHH-HCCCCCCHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHH
Q ss_conf             74788889999873-012686578887643------11115899999999999998642199899999998503469999
Q 537021.9.peg.4  445 LFNFSEDDIFKICT-QRHETETVYEYIQKF------ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF  517 (952)
Q Consensus       445 l~g~~~~~l~~l~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  517 (952)
T Consensus       415 ~RGiG~rTld~~r~~~r~~g~tLWqA~~~~~q~~~Lagra~~al~~F~~Li~~L~~~~~~m~L~~~~d~~~k~SgL~~~Y  494 (741)
T TIGR01075       415 TRGIGDRTLDEVRQAARERGLTLWQAAVELLQEKVLAGRAASALVRFVELIEALAEETADMPLHEQTDHVLKDSGLREMY  494 (741)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf             89875467999998765207418999999876336799999999999999999987553144688899998500367899


Q ss_pred             HHC-----CCHHHHHHHHHHHHHHHHHH--HCC-------C------CCHHHHHHHHHHCCCCCCCCCCCCCCCCEEECH
Q ss_conf             811-----35238999999999999985--205-------6------898999998850100132112357885303001
Q 537021.9.peg.4  518 ISR-----FGNEVIDVLDEFLNFTLRNE--QNS-------Y------SSLQELISELEQYPPTIKRAHSANHNEVRIMTV  577 (952)
Q Consensus       518 ~~~-----~~~~~~~~l~~l~~~a~~~e--~~~-------~------~~l~~f~~~l~~~~~~~~~~~~~~~d~V~imTi  577 (952)
T Consensus       495 ~~ekrgg~~~~~R~eNLeELV~at~~F~peds~fe~~p~n~~d~P~~~~l~AFLs~aaLEaGe--~qa~~~~~aVqLMTl  572 (741)
T TIGR01075       495 QQEKRGGEKGQARIENLEELVTATREFKPEDSNFEILPENAEDDPIMTELTAFLSHAALEAGE--GQADAGEDAVQLMTL  572 (741)
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC--HHCCCHHHHHHHHHH
T ss_conf             997214643235777889999887304646454332677767773033477887788764150--010101235466665


Q ss_pred             HHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             22145677779981588776776544422234455566663123544457874779999999764444678878751146
Q 537021.9.peg.4  578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR  657 (952)
Q Consensus       578 H~SKGLEfpvV~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ee~RLlYVAlTR  657 (952)
T Consensus       573 HsAKGLEFp~VFlvG~EeG~FPS~~Sl----------------------------------~E~GrLEEERRL~YVgiTR  618 (741)
T TIGR01075       573 HSAKGLEFPLVFLVGMEEGLFPSQMSL----------------------------------DERGRLEEERRLAYVGITR  618 (741)
T ss_pred             HHHCCCCCCCEEEEECCCCCCCCHHCC----------------------------------CCCCCCHHHHHHHHHHHHH
T ss_conf             632024557524662026778311210----------------------------------3486952788889899787


Q ss_pred             CCCEEEEEECCC
Q ss_conf             652899983167
Q 537021.9.peg.4  658 ASDQLIICKHSN  669 (952)
Q Consensus       658 Ak~~L~l~~~~~  669 (952)
T Consensus       619 A~~kL~ityAe~  630 (741)
T TIGR01075       619 ARKKLTITYAEA  630 (741)
T ss_pred             HHHHHHHHHHHH
T ss_conf             756655768864