HHsearch alignment for GI: peg_410 and conserved domain: TIGR01075
>TIGR01075 uvrD DNA helicase II; InterPro: IPR005753 The SOS response is required for efficient nucleotide excision repair (NER) of the major ultraviolet light (UV) induced DNA lesions. The expression of three NER genes, uvrA, uvrB, and uvrD, is upregulated as part of the SOS response. UvrD differs from the others in that it is not involved in lesion recognition but rather in promoting the post-incision steps of NER, including turnover of the UvrBC incision complex . The form of the UvrD helicase with optimal helicase activity is oligomeric with at least two sites for binding the DNA substrate, where one site contacts regions of the 3'-ssDNA tail that are distal from the single-stranded/double-stranded DNA junction.; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=596.88 Aligned_cols=439 Identities=24% Similarity=0.307 Sum_probs=361.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECHHCCCHHHHHHHHHHHHHCC
Q ss_conf 99999999999999999986997758999999998315842489999986179899980710199999999999841002
Q 537021.9.peg.4 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204 (952)
Q Consensus 125 ~l~~~~~~~~~~y~~~k~~~~~ldf~Dl~~~a~~lL~~~~~~~~~~~~l~~~~~~ilVDEfQDT~~~Q~~il~~L~~~~~ 204 (952)
T Consensus 165 ~~~~~~~~~Y~~Yq~~C~RaGlVDFAELLLRa~ELl~~~~~---~l~hY~~RF~~ILvDEFQDTN~iQYaw~rllAg--- 238 (741)
T TIGR01075 165 PVERTWIKIYAEYQEACDRAGLVDFAELLLRAYELLRNKPH---ILQHYQERFKHILVDEFQDTNKIQYAWIRLLAG--- 238 (741)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHH---HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCC---
T ss_conf 68999999999987530637734589999999997528958---999998761005432324500699999999608---
Q ss_pred CCCCCCCCCCEEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 46766676864999966656765424888478999999966521345765312006866688789999999997112100
Q 537021.9.peg.4 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284 (952)
Q Consensus 205 ~~~~~~~~~~~l~~VGD~kQSIY~FRGAd~~~~~~~~~~f~~~~~~~~~~~~~~~L~~N~RS~~~Ii~~~N~~f~~~~~~ 284 (952)
T Consensus 239 -------~~~~V~~VGDDDQsIYgwRGA~veni~~fl~dF~~--------~~tirLEQNYRS~~nIL~AAN~lIanN~~R 303 (741)
T TIGR01075 239 -------ETGNVMIVGDDDQSIYGWRGAQVENIQKFLKDFPI--------AETIRLEQNYRSTANILAAANALIANNDER 303 (741)
T ss_pred -------CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCC--------CCCEEECCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf -------99637988558742012457641888999974678--------885342003221788999988998528865
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 12332212221223344788874365113444322334310111110001113333688899999999999983586221
Q 537021.9.peg.4 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364 (952)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~I~~l~~~~~~~~ 364 (952)
T Consensus 304 lGK~LwT~g---------~~Ge~i~~--------------------------YsAfneLdEArFvv~~~~~w~~~GG--- 345 (741)
T TIGR01075 304 LGKNLWTDG---------EVGEPISL--------------------------YSAFNELDEARFVVSRIKAWQREGG--- 345 (741)
T ss_pred CCCCEECCC---------CCCCCEEE--------------------------EECCCHHHHHHHHHHHHHHHHHCCC---
T ss_conf 675301345---------67870257--------------------------6513413789999999999986589---
Q ss_pred CCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCC
Q ss_conf 25436878244689861531012248999998741697366048621123310522687688874813110245430587
Q 537021.9.peg.4 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444 (952)
Q Consensus 365 ~~~~r~~~~~diaVL~r~~~~~~~~~~~l~al~~~~~ip~~~~~~~~~~~~~~v~~l~a~l~~l~~p~~~~~~~~~L~sp 444 (952)
T Consensus 346 -------~l~e~AvLYRsNAQSRv~Ee~L----~~~~iPYriYGG~RFFERqEIKdALaYLRL~~Nr~DDaAfeRViNtP 414 (741)
T TIGR01075 346 -------ALDEIAVLYRSNAQSRVLEEAL----LRASIPYRIYGGMRFFERQEIKDALAYLRLIANRNDDAAFERVINTP 414 (741)
T ss_pred -------CCCCEEEEECCCHHHHHHHHHH----HHCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCHHCCEECCC
T ss_conf -------6413656632552468999999----74489804307863256788999999998714887530320300488
Q ss_pred CCCCCHHHHHHHHH-HCCCCCCHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHH
Q ss_conf 74788889999873-012686578887643------11115899999999999998642199899999998503469999
Q 537021.9.peg.4 445 LFNFSEDDIFKICT-QRHETETVYEYIQKF------ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517 (952)
Q Consensus 445 l~g~~~~~l~~l~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 517 (952)
T Consensus 415 ~RGiG~rTld~~r~~~r~~g~tLWqA~~~~~q~~~Lagra~~al~~F~~Li~~L~~~~~~m~L~~~~d~~~k~SgL~~~Y 494 (741)
T TIGR01075 415 TRGIGDRTLDEVRQAARERGLTLWQAAVELLQEKVLAGRAASALVRFVELIEALAEETADMPLHEQTDHVLKDSGLREMY 494 (741)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 89875467999998765207418999999876336799999999999999999987553144688899998500367899
Q ss_pred HHC-----CCHHHHHHHHHHHHHHHHHH--HCC-------C------CCHHHHHHHHHHCCCCCCCCCCCCCCCCEEECH
Q ss_conf 811-----35238999999999999985--205-------6------898999998850100132112357885303001
Q 537021.9.peg.4 518 ISR-----FGNEVIDVLDEFLNFTLRNE--QNS-------Y------SSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577 (952)
Q Consensus 518 ~~~-----~~~~~~~~l~~l~~~a~~~e--~~~-------~------~~l~~f~~~l~~~~~~~~~~~~~~~d~V~imTi 577 (952)
T Consensus 495 ~~ekrgg~~~~~R~eNLeELV~at~~F~peds~fe~~p~n~~d~P~~~~l~AFLs~aaLEaGe--~qa~~~~~aVqLMTl 572 (741)
T TIGR01075 495 QQEKRGGEKGQARIENLEELVTATREFKPEDSNFEILPENAEDDPIMTELTAFLSHAALEAGE--GQADAGEDAVQLMTL 572 (741)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC--HHCCCHHHHHHHHHH
T ss_conf 997214643235777889999887304646454332677767773033477887788764150--010101235466665
Q ss_pred HHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 22145677779981588776776544422234455566663123544457874779999999764444678878751146
Q 537021.9.peg.4 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657 (952)
Q Consensus 578 H~SKGLEfpvV~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ee~RLlYVAlTR 657 (952)
T Consensus 573 HsAKGLEFp~VFlvG~EeG~FPS~~Sl----------------------------------~E~GrLEEERRL~YVgiTR 618 (741)
T TIGR01075 573 HSAKGLEFPLVFLVGMEEGLFPSQMSL----------------------------------DERGRLEEERRLAYVGITR 618 (741)
T ss_pred HHHCCCCCCCEEEEECCCCCCCCHHCC----------------------------------CCCCCCHHHHHHHHHHHHH
T ss_conf 632024557524662026778311210----------------------------------3486952788889899787
Q ss_pred CCCEEEEEECCC
Q ss_conf 652899983167
Q 537021.9.peg.4 658 ASDQLIICKHSN 669 (952)
Q Consensus 658 Ak~~L~l~~~~~ 669 (952)
T Consensus 619 A~~kL~ityAe~ 630 (741)
T TIGR01075 619 ARKKLTITYAEA 630 (741)
T ss_pred HHHHHHHHHHHH
T ss_conf 756655768864