HHsearch alignment for GI: peg_410 and conserved domain: TIGR01447
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=98.14 E-value=2e-06 Score=63.10 Aligned_cols=147 Identities=16% Similarity=0.175 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHH------HHHHHHHHCCCC-HHHHHHHHHHC--CCCEEEEECHHCCCHHHH
Q ss_conf 689999999999999999998699775899------999999831584-24899999861--798999807101999999
Q 537021.9.peg.4 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDL------IINTNDLLKKRD-VSAWIRYKIDQ--EINHILIDEVQDTSLIQW 193 (952)
Q Consensus 123 ~~~l~~~~~~~~~~y~~~k~~~~~ldf~Dl------~~~a~~lL~~~~-~~~~~~~~l~~--~~~~ilVDEfQDT~~~Q~ 193 (952)
T Consensus 287 GKAa~RL~esl~~~~~~L~~~~~aid~~~~~~~~~~~~TiHrLLG~~~I~~~~fr~h~~N~L~~DVLvvDE---aSMVdl 363 (753)
T TIGR01447 287 GKAAARLAESLRKAVKKLAAENMAIDEDLIAALPSEATTIHRLLGIKPIDTKRFRHHERNPLPLDVLVVDE---ASMVDL 363 (753)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECC---CHHCCH
T ss_conf 47999999999988632234236658798548720456888861661478767767777889855278706---002267
Q ss_pred HHHHHHHHHCCCCCCCCCCCCE--------EEEEECCHH-----------HHHHHCCCC-------HHHH-HHHHH---H
Q ss_conf 9999984100246766676864--------999966656-----------765424888-------4789-99999---9
Q 537021.9.peg.4 194 EVIRSLTEDFFVGKNTHSSPRT--------LFAVGDEKQ-----------SIYSFHGAE-------PKRV-LREKR---I 243 (952)
Q Consensus 194 ~il~~L~~~~~~~~~~~~~~~~--------l~~VGD~kQ-----------SIY~FRGAd-------~~~~-~~~~~---~ 243 (952)
T Consensus 364 ~lm~kL~~A-------~~~~~k~~KLy~~~LIllGD~nQL~sveaG~Vl~~l~~~~~~g~~~y~~~~~a~l~~~~~~~~~ 436 (753)
T TIGR01447 364 PLMAKLLKA-------LPPNTKDKKLYADRLILLGDKNQLPSVEAGAVLGDLCELANEGESLYAAEKSALLAELLGEVAA 436 (753)
T ss_pred HHHHHHHHH-------CCCCCCCCCHHHCCCCEECCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 999999972-------2630013201010200122678888754355579999997537500245488899985478899
Q ss_pred HHHHC--CCCCCCCCEEECCCCCCCCH--HHHHHHHHHHH
Q ss_conf 66521--34576531200686668878--99999999971
Q 537021.9.peg.4 244 NQKRA--TNAGQKFSIIELPLSFRSTA--DILTVVDKVFS 279 (952)
Q Consensus 244 f~~~~--~~~~~~~~~~~L~~N~RS~~--~Ii~~~N~~f~ 279 (952)
T Consensus 437 ~~~~~~~~~~~~~d~~~~L~~ShRf~~~S~i~~La~Ai~k 476 (753)
T TIGR01447 437 VKKIASKTRNPLSDNVCMLKTSHRFGKDSGIGQLAKAINK 476 (753)
T ss_pred HHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 9985312115235447653012204875067899999977