>TIGR02786 addB_alphas double-strand break repair protein AddB; InterPro: IPR014153 AddAB is a system well described in the Firmicutes as a replacement for RecBCD in many prokaryotes for the repair of double stranded break DNA damage . More recently, a distantly related gene pair conserved in many alphaproteobacteria was shown also to function in double-stranded break repair in Rhizobium etli. This family consists of AddB proteins of alphaproteobacterial types..

Probab=99.88 E-value=1.7e-19 Score=157.82 Aligned_cols=723 Identities=11% Similarity=0.073 Sum_probs=340.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH----HHH-HHHHHHCCCCHHHHHHHHHHCCCCEEEEECHHCCC Q ss_conf 8778887668999999999999999999869977589----999-99998315842489999986179899980710199 Q 537021.9.peg.4 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFED----LII-NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189 (952) Q Consensus 115 ~~~~~~~~~~~l~~~~~~~~~~y~~~k~~~~~ldf~D----l~~-~a~~lL~~~~~~~~~~~~l~~~~~~ilVDEfQDT~ 189 (952) T Consensus 177 ~~~~la~hWQ~tl~FL~Iv~~~WP~~L~E~~rs~p~arR~~lL~a~a~~w~~~PP~~P------------viaAGstGs~ 244 (1096) T TIGR02786 177 AEDDLARHWQVTLKFLEIVTRAWPKRLAELGRSNPAARRNRLLRALAARWATNPPEGP------------VIAAGSTGSI 244 (1096) T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC------------EEEEECCCCH T ss_conf 8342458999999999999986011344524755888999999999999985789975------------8887427887 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCEEEEEE-CCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCH Q ss_conf 9999999998410024676667686499996-665676542488847899999996652134576531200686668878 Q 537021.9.peg.4 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG-DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268 (952) Q Consensus 190 ~~Q~~il~~L~~~~~~~~~~~~~~~~l~~VG-D~kQSIY~FRGAd~~~~~~~~~~f~~~~~~~~~~~~~~~L~~N~RS~~ 268 (952) T Consensus 245 PAta~LL~vvA~L---------P~GaVVLPGLD~~l~e~~W~~------------L~~~----~~~~~~f~-~ps~~~HP 298 (1096) T TIGR02786 245 PATADLLAVVARL---------PQGAVVLPGLDLDLDEEAWQA------------LGPA----GTEEDTFI-EPSVFGHP 298 (1096) T ss_pred HHHHHHHHHHHHC---------CCCCEECCCCCCCCCHHHHHH------------CCCC----CCCCCCCC-CCCCCCCC T ss_conf 8999999999836---------589387678888888899950------------5665----11024556-67778885 Q ss_pred HHHHHHHHHHHC-CCCCCCCCCCCCCCC---------CCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCCCC Q ss_conf 999999999711-210012332212221---------2233447888743651134443223343101111100011133 Q 537021.9.peg.4 269 DILTVVDKVFSI-PENAQGLSEDSTTTI---------RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338 (952) Q Consensus 269 ~Ii~~~N~~f~~-~~~~~~~~~~~~~~~---------~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (952) T Consensus 299 Qy--~L~~LL~~~G~~R~eV~~~~~~~~~~~~~R~~~~seaLrPA~--~T~~W~~~~~~~d~~a~L~~~~~a~~~~s~iE 374 (1096) T TIGR02786 299 QY--GLKRLLDRLGVSRKEVEEWGPDADRGLRKRERLVSEALRPAE--TTDAWGSQREQPDVEASLEDIAEAFANLSLIE 374 (1096) T ss_pred HH--HHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHCCHH--HHHHHHCCCCCCCCCCCCCHHHHCCCCCEEEC T ss_conf 79--999999984888567631588767666789999998508724--66775213646677788406751024650304 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CEEEEE-ECCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCC Q ss_conf 336888999999999999835862212543687824-468986-153101224899999874169736604862112331 Q 537021.9.peg.4 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK-DILVLV-RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416 (952) Q Consensus 339 ~~~~~~~a~~i~~~I~~l~~~~~~~~~~~~r~~~~~-diaVL~-r~~~~~~~~~~~l~al~~~~~ip~~~~~~~~~~~~~ 416 (952) T Consensus 375 A~~~reEA~AIAlaLR~A~ed~-------------~~~tAALVTPDR~LARRV----~a~L~RFGi~aDDSaG~pL~~tp 437 (1096) T TIGR02786 375 AANEREEALAIALALREAVEDP-------------GKKTAALVTPDRALARRV----AAELKRFGIEADDSAGRPLSQTP 437 (1096) T ss_pred CCCHHHHHHHHHHHHHHHHHHC-------------CCCCEECCCCCHHHHHHH----HHHHHHCCCCCCCCCCCCHHHHH T ss_conf 7887469999999999987224-------------898312113015589999----98765348665776774233311 Q ss_pred CHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCH--HH---------HHHHHHHCCC--CCCHHHH-------------- Q ss_conf 0522687688874813110245430587747888--89---------9998730126--8657888-------------- Q 537021.9.peg.4 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE--DD---------IFKICTQRHE--TETVYEY-------------- 469 (952) Q Consensus 417 ~v~~l~a~l~~l~~p~~~~~~~~~L~spl~g~~~--~~---------l~~l~~~~~~--~~~~~~~-------------- 469 (952) T Consensus 438 ~a~llrl~~~~~~~pldPv~LLs~lKHPL~~lG~~r~~~~~a~~~LEL~~LRG~~~~~G~ag~~~~~~~~~~~~~a~DhG 517 (1096) T TIGR02786 438 AAVLLRLLAEAVFAPLDPVALLSLLKHPLVRLGEERDDWRAAAELLELVALRGGTPAAGRAGILALPAFFERRLLALDHG 517 (1096) T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCC T ss_conf 78999999999866788056999863056533788268999886221565348666778511565899987763112267 Q ss_pred -----------------HHHH----------HHHHHHHHHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHCCHH Q ss_conf -----------------7643----------11115899999999999998642199--------899999998503469 Q 537021.9.peg.4 470 -----------------IQKF----------ANCGISKFQHVIKYIHELIHIAQFCS--------PHDFFTLILGAKKGR 514 (952) Q Consensus 470 -----------------~~~~----------~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~~~~~~l~~~~~~ 514 (952) T Consensus 518 asaDa~d~~~~pa~~~~~~~~~~~~~~~~~~Ar~L~~~l~~a~~Pl~~~~~~~~~~~raftdklPl~e~a~~~~~~~e~l 597 (1096) T TIGR02786 518 ASADAADDPEVPAWHSALPEQSQALAESIEAARALCEALEIAIEPLESLAGRREELDRAFTDKLPLAELAEATVELLEAL 597 (1096) T ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCHHHHCCCHHHHHHHHHHHHHHH T ss_conf 66665545310024321463124502248999999999999863089986110210203330378899999999999972 Q ss_pred H----H-HHHCCCHHHHHHHHHHHHHHHHHH--HCCCCCHHHHHHHHHHCCCCCCCC-CCC-CCCCCEEECHHHCCCCCC Q ss_conf 9----9-981135238999999999999985--205689899999885010013211-235-788530300122145677 Q 537021.9.peg.4 515 Q----Q-FISRFGNEVIDVLDEFLNFTLRNE--QNSYSSLQELISELEQYPPTIKRA-HSA-NHNEVRIMTVHTAKGLES 585 (952) Q Consensus 515 ~----~-~~~~~~~~~~~~l~~l~~~a~~~e--~~~~~~l~~f~~~l~~~~~~~~~~-~~~-~~d~V~imTiH~SKGLEf 585 (952) T Consensus 598 ~~d~~~~l~~~~~~~~G~~la~~~~~l~~~~~~~~l~~~~~~~~~~~~~L~~~~~VrG~~~~~hPRi~IwG~LEARLq~~ 677 (1096) T TIGR02786 598 SRDEEGWLAALYEGEAGHKLASLLAELLSSAADHGLDFDASDWPDVLQALVATEAVRGPRDGGHPRIFIWGALEARLQTA 677 (1096) T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCCCCCCEEEHHHHHHHHHHH T ss_conf 78988886777567789999999998631233545554655068999985168615588888888512036788887542 Q ss_pred CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 77998158877677654442223445556666312354445787477999999-97644446788787511466528999 Q 537021.9.peg.4 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH-LKKSTQEEYNRLLYVGMTRASDQLII 664 (952) Q Consensus 586 pvV~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Ee~RLlYVAlTRAk~~L~l 664 (952) T Consensus 678 D~~v~GGLNEGvWP~~~~~DPfLSR~Mr~~~GL~pPE----RRIGlsAHDF~~ta~-----------------Ga~~vvL 736 (1096) T TIGR02786 678 DLLVIGGLNEGVWPPATRNDPFLSRPMRHELGLPPPE----RRIGLSAHDFQQTAL-----------------GAKEVVL 736 (1096) T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCH----HHHHHHHHHHHHHHH-----------------CCCCEEE T ss_conf 2006700236788666677787880555631788723----554101778999971-----------------3650342 Q ss_pred EECCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCC--CCCCCCCCCCCC-CC-------CCCCCCCCCCCHHHHHHHH Q ss_conf 8316777766654321068873103564332222345--444433222110-12-------2355443210001222210 Q 537021.9.peg.4 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT--NSINKDEWIAYE-WS-------THHPENTPLEREETIKQLM 734 (952) Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~ 734 (952) T Consensus 737 tra-~R~~~APaVpSRWL~RL~a~~gGlPDqGG~~~~~~~r~~G~~~~~Wa~~LD~p~~G~~~~~rP~P~PP~~~RPr~~ 815 (1096) T TIGR02786 737 TRA-ARSGGAPAVPSRWLQRLEALLGGLPDQGGADVLEELRRRGERLLHWARALDEPQDGVAPVKRPAPRPPVALRPRKL 815 (1096) T ss_pred EEC-CCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCE T ss_conf 000-0378699625689999999854687632589999877337078999998418878888788522357864478813 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHH--------HHHHH Q ss_conf 0001124530334433233423361110010015554446630155677999999985668996568--------99999 Q 537021.9.peg.4 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR--------KNFIT 806 (952) Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~~~~~~a~~~Gt~vH~~lE~l~~~~~~~~--------~~~~~ 806 (952) T Consensus 816 SVTeie~L~rDPYAiYAk~ILk----------L~pLdPl~~~p~AA~RG~liH~ile~f~~~~~~~~~~~a~~~L~~~~~ 885 (1096) T TIGR02786 816 SVTEIETLRRDPYAIYAKHILK----------LRPLDPLDRDPEAADRGTLIHDILERFVEEVADPLPADAADVLRKIGR 885 (1096) T ss_pred EEEEECCCCCCCHHHHHHHHCC----------CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH T ss_conf 5532003568821778755216----------776777678832466322999999999875114673217999999999 Q ss_pred HHHHHHCCCCCH--HHHHHHHHHHHHHHCCHHHHHHHCCCCCCCE------EEEEEEECCCCCEEEEEEEEEEEEECC-E Q ss_conf 998500458998--8999999999998629655787177785611------378886238885899979778999799-8 Q 537021.9.peg.4 807 SYCTKNAKLWPA--KEYKNLLLSITRLLENPMMTTAMSCDSYSEV------SVSGKINCPKKDIIISGRIDQISISQQ-N 877 (952) Q Consensus 807 ~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Ev------~~e~~~~~~~~~~~i~G~IDri~~~~~-~ 877 (952) T Consensus 886 ~~l~~~~~p~~~~a~W~pRf~~~A~~~~~wE~~Rr~~~~~~~~E~~~~~~~~~~~e~~~~~~g~tL~GrADRID~~~~G~ 965 (1096) T TIGR02786 886 KELASLNLPPEAEALWWPRFARIADWFADWERARRLDVRRIFAEARGRKELVGERELRAAIRGFTLSGRADRIDRTADGS 965 (1096) T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCEECCEEEEEEEEEEEECCCCC T ss_conf 98674247875888638899999999999998744343212463004025764134400014527877876776369884 Q ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-C--CCC-CEEEEEEECCCC Q ss_conf 9999725801389998999998899999999999996-7--998-278999985598 Q 537021.9.peg.4 878 IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS-Y--PNK-SLVCLLIYVSEP 930 (952) Q Consensus 878 ~~IiDyKT~~~~~~~~~~~~~~Y~~QL~~Y~~al~~~-~--p~~-~V~~~l~y~~~~ 930 (952) T Consensus 966 ~~I~DYKTG~pP--S~kQv~~gl~pQLaLEaAll~~GaF~D~~~~~~~~~L~y~~l~ 1020 (1096) T TIGR02786 966 AAILDYKTGAPP--SGKQVRAGLSPQLALEAALLMRGAFKDIGAVPTPAQLVYVRLG 1020 (1096) T ss_pred EEEEEECCCCCC--HHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEC T ss_conf 798862468895--2898850362779999999981888577777761023666555

HHsearch alignment for GI: peg_410 and conserved domain: TIGR02786