HHsearch results for GI: peg_410 and protein with PDBid: 1pjr_A

>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=100.00  E-value=0  Score=504.36  Aligned_cols=440  Identities=24%  Similarity=0.325  Sum_probs=319.6

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf             99999999999999998699775899999999831584248999998617989998071019999999999984100246
Q 537021.9.peg.4  127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG  206 (952)
Q Consensus       127 ~~~~~~~~~~y~~~k~~~~~ldf~Dl~~~a~~lL~~~~~~~~~~~~l~~~~~~ilVDEfQDT~~~Q~~il~~L~~~~~~~  206 (952)
                      ......++..|+..+.+.+.+||+|++..+..++.+.+.   ++..++.+|+|||||||||||++|++|++.|++     
T Consensus       170 ~~~~~~~y~~y~~~l~~~~~~d~~d~~~~~~~ll~~~~~---~~~~~~~~~~~ilvDE~QDt~~~q~~il~~L~~-----  241 (724)
T 1pjr_A          170 EKVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVPD---VLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAE-----  241 (724)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEECTTHHHHHHHHHHHHCHH---HHHHHHHHCSEEEESSGGGCCHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHH---HHHHHHHHCCEECCCCCCCCHHHHHHHHHHHHC-----
T ss_conf             999999999999999984999868999999998616999---999987632342132332005889999998733-----


Q ss_pred             CCCCCCCCEEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf             76667686499996665676542488847899999996652134576531200686668878999999999711210012
Q 537021.9.peg.4  207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG  286 (952)
Q Consensus       207 ~~~~~~~~~l~~VGD~kQSIY~FRGAd~~~~~~~~~~f~~~~~~~~~~~~~~~L~~N~RS~~~Ii~~~N~~f~~~~~~~~  286 (952)
                           ...++|+|||||||||+||||++.+|.+|.+.|+.        .+.+.|++||||++.|++++|.+|.++..+..
T Consensus       242 -----~~~~l~~vGD~dQsIY~frGA~~~~~~~f~~~~~~--------~~~~~L~~NyRs~~~I~~~an~li~~~~~~~~  308 (724)
T 1pjr_A          242 -----RFQNICAVGDADQSIYRWRGADIQNILSFERDYPN--------AKVILLEQNYRSTKRILQAANEVIEHNVNRKP  308 (724)
T ss_dssp             -----TTCCEEEEECGGGCCCGGGTCCTHHHHTHHHHSTT--------CEEEEECBCSSSCHHHHHHHHHHHTTCSSCCC
T ss_pred             -----CCCCEEEECCCHHCCCCCCCCCHHHHHHHHHHCCC--------CEEEECCCCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf             -----45645885373110245689888999999985566--------76997634557650589999999975224575


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             33221222122334478887436511344432233431011111000111333368889999999999998358622125
Q 537021.9.peg.4  287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG  366 (952)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~I~~l~~~~~~~~~~  366 (952)
                      .....         ....+..+.+.                          ........+..++..|..++..+.     
T Consensus       309 k~~~~---------~~~~g~~i~~~--------------------------~~~~~~~e~~~~~~~i~~~~~~~~-----  348 (724)
T 1pjr_A          309 KRIWT---------ENPEGKPILYY--------------------------EAMNEADEAQFVAGRIREAVERGE-----  348 (724)
T ss_dssp             CCCBC---------SSCCCCCEEEE--------------------------EEEEHHHHHHHHHHHHHHHHTTTS-----
T ss_pred             CCCCC---------CCCCCCCEEEE--------------------------ECCCHHHHHHHHHHHHHHHHHHCC-----
T ss_conf             42234---------47889832788--------------------------449889999987768999998079-----


Q ss_pred             CCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCCC
Q ss_conf             43687824468986153101224899999874169736604862112331052268768887481311024543058774
Q 537021.9.peg.4  367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF  446 (952)
Q Consensus       367 ~~r~~~~~diaVL~r~~~~~~~~~~~l~al~~~~~ip~~~~~~~~~~~~~~v~~l~a~l~~l~~p~~~~~~~~~L~spl~  446 (952)
                          .+++|||||+|++.+...++..|    ...|||+...++.++++++++++++++|+++.+|.++.++.+++.+|..
T Consensus       349 ----~~~~diAIL~R~n~~~~~le~~L----~~~~Ip~~~~~~~~~~~~~eikdlla~lr~l~~~~d~~s~~ril~~p~~  420 (724)
T 1pjr_A          349 ----RRYRDFAVLYRTNAQSRVMEEML----LKANIPYQIVGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKR  420 (724)
T ss_dssp             ----CCGGGEEEEESSGGGHHHHHHHH----HHTTCCEEEETSCCGGGSHHHHHHHHHHHHHHCTTCHHHHHHHTTSSCC
T ss_pred             ----CCCCCEEEEEECHHHHHHHHHHH----HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC
T ss_conf             ----98200168760567799999999----9879999996897611479999999999998098866999999846433


Q ss_pred             CCCHHHHHHHHHHCCC-CCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHC
Q ss_conf             7888899998730126-865788-----8764311115899999999999998642199899999998503469999811
Q 537021.9.peg.4  447 NFSEDDIFKICTQRHE-TETVYE-----YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR  520 (952)
Q Consensus       447 g~~~~~l~~l~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  520 (952)
                      |+....+..+...... ....++     .................................+++..++...+....+...
T Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~  500 (724)
T 1pjr_A          421 GIGASTIDKLVRYAADHELSLFEALGELEMIGLGAKAAGALAAFRSQLEQWTQLQEYVSVTELVEEVLDKSGYREMLKAE  500 (724)
T ss_dssp             TTTSCCCC------------CTTTTTSHHHHCCTTTTTTTTHHHHHHHHHHHHHTTTSCHHHHHHHHHHHTSHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHC
T ss_conf             56724678999999860211799987644310003445567788898888777652034999999999854708887520


Q ss_pred             CCHH---HHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHCCCCCCC---CCCCCCCCCEEECHHHCCCCCCCEEEECCC
Q ss_conf             3523---8999999999999985-20568989999988501001321---123578853030012214567777998158
Q 537021.9.peg.4  521 FGNE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKR---AHSANHNEVRIMTVHTAKGLESPVVFLVDT  593 (952)
Q Consensus       521 ~~~~---~~~~l~~l~~~a~~~e-~~~~~~l~~f~~~l~~~~~~~~~---~~~~~~d~V~imTiH~SKGLEfpvV~i~~l  593 (952)
                      ....   ...+..++......+. ......+..|+..+.........   ......++|+|||||+|||||||+|||+|+
T Consensus       501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~~~~~~~~~~~~~~V~l~TiH~sKGlEfd~V~l~g~  580 (724)
T 1pjr_A          501 RTIEAQSRLENLDEFLSVTKHFENVSDDKSLIAFLTDLALISDLDELDGTEQAAEGDAVMLMTLHAAKGLEFPVVFLIGM  580 (724)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHHHHTTTCC-------------CCCEEEEEGGGGTTCCEEEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHCCCCCCCEEEECCC
T ss_conf             37668999998999999999987513400399999999863203334301345557807998330046766788998177


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
Q ss_conf             8776776544422234455566663123544457874779999999764444678878751146652899983167
Q 537021.9.peg.4  594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN  669 (952)
Q Consensus       594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ee~RLlYVAlTRAk~~L~l~~~~~  669 (952)
                      .++.+|+....                                  .....++||||||||||||||++|||+++..
T Consensus       581 ~eg~fP~~~~~----------------------------------~~~~~leEERRLfYVA~TRAk~~L~lt~~~~  622 (724)
T 1pjr_A          581 EEGIFPHNRSL----------------------------------EDDDEMEEERRLAYVGITRAEEELVLTSAQM  622 (724)
T ss_dssp             BTBTTTBGGGG----------------------------------TCHHHHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             CCCCCCCCCCC----------------------------------CCCHHHHHHHHHHHHHHHHHHCEEEEEEECC
T ss_conf             56778530014----------------------------------7715479999999988836854789997270