HHsearch results for GI: peg_410 and protein with PDBid: 1pjr_A
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=100.00 E-value=0 Score=504.36 Aligned_cols=440 Identities=24% Similarity=0.325 Sum_probs=319.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999999998699775899999999831584248999998617989998071019999999999984100246
Q 537021.9.peg.4 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206 (952)
Q Consensus 127 ~~~~~~~~~~y~~~k~~~~~ldf~Dl~~~a~~lL~~~~~~~~~~~~l~~~~~~ilVDEfQDT~~~Q~~il~~L~~~~~~~ 206 (952)
......++..|+..+.+.+.+||+|++..+..++.+.+. ++..++.+|+|||||||||||++|++|++.|++
T Consensus 170 ~~~~~~~y~~y~~~l~~~~~~d~~d~~~~~~~ll~~~~~---~~~~~~~~~~~ilvDE~QDt~~~q~~il~~L~~----- 241 (724)
T 1pjr_A 170 EKVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVPD---VLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAE----- 241 (724)
T ss_dssp HHHHHHHHHHHHHHHHHTTEECTTHHHHHHHHHHHHCHH---HHHHHHHHCSEEEESSGGGCCHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHH---HHHHHHHHCCEECCCCCCCCHHHHHHHHHHHHC-----
T ss_conf 999999999999999984999868999999998616999---999987632342132332005889999998733-----
Q ss_pred CCCCCCCCEEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 76667686499996665676542488847899999996652134576531200686668878999999999711210012
Q 537021.9.peg.4 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 (952)
Q Consensus 207 ~~~~~~~~~l~~VGD~kQSIY~FRGAd~~~~~~~~~~f~~~~~~~~~~~~~~~L~~N~RS~~~Ii~~~N~~f~~~~~~~~ 286 (952)
...++|+|||||||||+||||++.+|.+|.+.|+. .+.+.|++||||++.|++++|.+|.++..+..
T Consensus 242 -----~~~~l~~vGD~dQsIY~frGA~~~~~~~f~~~~~~--------~~~~~L~~NyRs~~~I~~~an~li~~~~~~~~ 308 (724)
T 1pjr_A 242 -----RFQNICAVGDADQSIYRWRGADIQNILSFERDYPN--------AKVILLEQNYRSTKRILQAANEVIEHNVNRKP 308 (724)
T ss_dssp -----TTCCEEEEECGGGCCCGGGTCCTHHHHTHHHHSTT--------CEEEEECBCSSSCHHHHHHHHHHHTTCSSCCC
T ss_pred -----CCCCEEEECCCHHCCCCCCCCCHHHHHHHHHHCCC--------CEEEECCCCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf -----45645885373110245689888999999985566--------76997634557650589999999975224575
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 33221222122334478887436511344432233431011111000111333368889999999999998358622125
Q 537021.9.peg.4 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 (952)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~I~~l~~~~~~~~~~ 366 (952)
..... ....+..+.+. ........+..++..|..++..+.
T Consensus 309 k~~~~---------~~~~g~~i~~~--------------------------~~~~~~~e~~~~~~~i~~~~~~~~----- 348 (724)
T 1pjr_A 309 KRIWT---------ENPEGKPILYY--------------------------EAMNEADEAQFVAGRIREAVERGE----- 348 (724)
T ss_dssp CCCBC---------SSCCCCCEEEE--------------------------EEEEHHHHHHHHHHHHHHHHTTTS-----
T ss_pred CCCCC---------CCCCCCCEEEE--------------------------ECCCHHHHHHHHHHHHHHHHHHCC-----
T ss_conf 42234---------47889832788--------------------------449889999987768999998079-----
Q ss_pred CCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCCC
Q ss_conf 43687824468986153101224899999874169736604862112331052268768887481311024543058774
Q 537021.9.peg.4 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446 (952)
Q Consensus 367 ~~r~~~~~diaVL~r~~~~~~~~~~~l~al~~~~~ip~~~~~~~~~~~~~~v~~l~a~l~~l~~p~~~~~~~~~L~spl~ 446 (952)
.+++|||||+|++.+...++..| ...|||+...++.++++++++++++++|+++.+|.++.++.+++.+|..
T Consensus 349 ----~~~~diAIL~R~n~~~~~le~~L----~~~~Ip~~~~~~~~~~~~~eikdlla~lr~l~~~~d~~s~~ril~~p~~ 420 (724)
T 1pjr_A 349 ----RRYRDFAVLYRTNAQSRVMEEML----LKANIPYQIVGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKR 420 (724)
T ss_dssp ----CCGGGEEEEESSGGGHHHHHHHH----HHTTCCEEEETSCCGGGSHHHHHHHHHHHHHHCTTCHHHHHHHTTSSCC
T ss_pred ----CCCCCEEEEEECHHHHHHHHHHH----HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC
T ss_conf ----98200168760567799999999----9879999996897611479999999999998098866999999846433
Q ss_pred CCCHHHHHHHHHHCCC-CCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHC
Q ss_conf 7888899998730126-865788-----8764311115899999999999998642199899999998503469999811
Q 537021.9.peg.4 447 NFSEDDIFKICTQRHE-TETVYE-----YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 (952)
Q Consensus 447 g~~~~~l~~l~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 520 (952)
|+....+..+...... ....++ .................................+++..++...+....+...
T Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~ 500 (724)
T 1pjr_A 421 GIGASTIDKLVRYAADHELSLFEALGELEMIGLGAKAAGALAAFRSQLEQWTQLQEYVSVTELVEEVLDKSGYREMLKAE 500 (724)
T ss_dssp TTTSCCCC------------CTTTTTSHHHHCCTTTTTTTTHHHHHHHHHHHHHTTTSCHHHHHHHHHHHTSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHC
T ss_conf 56724678999999860211799987644310003445567788898888777652034999999999854708887520
Q ss_pred CCHH---HHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHCCCCCCC---CCCCCCCCCEEECHHHCCCCCCCEEEECCC
Q ss_conf 3523---8999999999999985-20568989999988501001321---123578853030012214567777998158
Q 537021.9.peg.4 521 FGNE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKR---AHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 (952)
Q Consensus 521 ~~~~---~~~~l~~l~~~a~~~e-~~~~~~l~~f~~~l~~~~~~~~~---~~~~~~d~V~imTiH~SKGLEfpvV~i~~l 593 (952)
.... ...+..++......+. ......+..|+..+......... ......++|+|||||+|||||||+|||+|+
T Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~~~~~~~~~~~~~~V~l~TiH~sKGlEfd~V~l~g~ 580 (724)
T 1pjr_A 501 RTIEAQSRLENLDEFLSVTKHFENVSDDKSLIAFLTDLALISDLDELDGTEQAAEGDAVMLMTLHAAKGLEFPVVFLIGM 580 (724)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHHHHTTTCC-------------CCCEEEEEGGGGTTCCEEEEEECCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHCCCCCCCEEEECCC
T ss_conf 37668999998999999999987513400399999999863203334301345557807998330046766788998177
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
Q ss_conf 8776776544422234455566663123544457874779999999764444678878751146652899983167
Q 537021.9.peg.4 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669 (952)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ee~RLlYVAlTRAk~~L~l~~~~~ 669 (952)
.++.+|+.... .....++||||||||||||||++|||+++..
T Consensus 581 ~eg~fP~~~~~----------------------------------~~~~~leEERRLfYVA~TRAk~~L~lt~~~~ 622 (724)
T 1pjr_A 581 EEGIFPHNRSL----------------------------------EDDDEMEEERRLAYVGITRAEEELVLTSAQM 622 (724)
T ss_dssp BTBTTTBGGGG----------------------------------TCHHHHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCCCCCCCCCC----------------------------------CCCHHHHHHHHHHHHHHHHHHCEEEEEEECC
T ss_conf 56778530014----------------------------------7715479999999988836854789997270