HHsearch results for GI: peg_410 and protein with PDBid: 2wjy_A
>2wjy_A Regulator of nonsense transcripts 1; alternative splicing, nonsense mediated decay, zinc-finger, ATP-binding, polymorphism, metal-binding, UPF2; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=99.64 E-value=2.2e-13 Score=111.84 Aligned_cols=87 Identities=20% Similarity=0.214 Sum_probs=61.9
Q ss_pred HCCCCEEEEECHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHH-------HHHHCCCCHHHHHHHHHHHHH
Q ss_conf 6179899980710199999999999841002467666768649999666567-------654248884789999999665
Q 537021.9.peg.4 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS-------IYSFHGAEPKRVLREKRINQK 246 (952)
Q Consensus 174 ~~~~~~ilVDEfQDT~~~Q~~il~~L~~~~~~~~~~~~~~~~l~~VGD~kQS-------IY~FRGAd~~~~~~~~~~f~~ 246 (952)
..+|++++|||....+..+.-| .|.. +.+.+++|||++|- -...-|-+.++|.++...
T Consensus 513 ~~~Fd~vIIDEAsQ~~epe~li--pL~~----------~~k~lILVGD~~QLpP~v~s~~a~~~gl~~SLFeRl~~~--- 577 (800)
T 2wjy_A 513 KMQFRSILIDESTQATEPECMV--PVVL----------GAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--- 577 (800)
T ss_dssp TCCCSEEEETTGGGSCHHHHHH--HHTT----------TBSEEEEEECTTSCCCCCCCHHHHHTTTTSCHHHHHHHT---
T ss_pred CCCCCEEEEEHHHCCCCHHHHH--HHHH----------CCCEEEECCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHC---
T ss_conf 5798989975653377389999--9985----------241377766711368842457777547200099999762---
Q ss_pred HCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 213457653120068666887899999999971121
Q 537021.9.peg.4 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282 (952)
Q Consensus 247 ~~~~~~~~~~~~~L~~N~RS~~~Ii~~~N~~f~~~~ 282 (952)
+...+.|.++||+.|.|.+|.|..|-...
T Consensus 578 -------~~~~~~L~~QYRmhp~I~~fps~~FY~g~ 606 (800)
T 2wjy_A 578 -------GIRPIRLQVQYRMHPALSAFPSNIFYEGS 606 (800)
T ss_dssp -------TCCCEECCEECSSCHHHHHHHHHHHSTTC
T ss_pred -------CCCCEEHHHHCCCCHHHHHHHHHHHHCCC
T ss_conf -------58822488874867799983077761877