Query 537021.9.peg.410_1
Match_columns 952
No_of_seqs 254 out of 5600
Neff 9.9
Searched_HMMs 13730
Date Tue May 24 22:51:09 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_410.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 g1qhh.1 c.37.1.19 (A:,B:,C:,D: 100.0 0 0 410.1 40.2 424 127-669 167-594 (623)
2 d1w36b2 c.37.1.19 (B:486-880) 100.0 3.3E-43 0 326.2 26.5 298 336-669 24-335 (395)
3 d1w36b1 c.37.1.19 (B:1-485) Ex 100.0 9.6E-39 7E-43 293.9 16.9 143 123-284 325-467 (485)
4 d1uaaa2 c.37.1.19 (A:308-640) 100.0 1.5E-32 1.1E-36 248.9 28.3 279 343-671 14-309 (333)
5 d1pjra2 c.37.1.19 (A:319-651) 100.0 3.2E-32 2.3E-36 246.6 23.8 295 344-685 13-323 (333)
6 d1w36c2 c.37.1.19 (C:348-817) 100.0 3.4E-28 2.5E-32 217.5 19.0 312 341-688 34-407 (470)
7 d1pjra1 c.37.1.19 (A:1-318) DE 99.9 2.4E-24 1.7E-28 189.6 14.9 138 127-285 170-307 (318)
8 d1uaaa1 c.37.1.19 (A:2-307) DE 99.9 3.8E-24 2.8E-28 188.1 14.8 138 128-286 161-298 (306)
9 d1w36b3 c.52.1.24 (B:899-1174) 99.7 3.3E-18 2.4E-22 145.1 9.6 170 775-947 46-273 (276)
10 d1w36d2 c.37.1.19 (D:361-606) 98.8 2E-09 1.5E-13 81.4 5.1 52 570-667 171-222 (246)
11 d1w36d1 c.37.1.19 (D:2-360) Ex 96.7 0.0061 4.5E-07 34.5 8.9 13 572-584 234-246 (359)
12 d1xx6a1 c.37.1.24 (A:2-142) Th 84.6 0.73 5.3E-05 19.4 5.4 40 171-220 75-114 (141)
13 d2b8ta1 c.37.1.24 (A:11-149) T 73.9 1.5 0.00011 17.1 4.8 25 176-200 79-103 (139)
14 d1xbta1 c.37.1.24 (A:18-150) T 54.0 3.5 0.00025 14.5 5.1 35 175-220 72-106 (133)
15 d1a1va1 c.37.1.14 (A:190-325) 48.2 4.2 0.00031 13.9 4.7 26 175-200 93-118 (136)
16 d1xmxa_ c.52.1.26 (A:) Hypothe 35.0 6.6 0.00048 12.5 8.6 71 850-929 276-346 (385)
17 d1avqa_ c.52.1.13 (A:) lambda 29.1 8.2 0.0006 11.8 5.1 80 860-947 112-205 (228)
18 d1h6va1 c.3.1.5 (A:10-170,A:29 27.8 4.5 0.00033 13.7 -0.6 18 389-408 16-33 (235)
19 d2joka1 a.168.1.1 (A:78-261) E 23.9 9 0.00065 11.5 0.3 13 219-231 1-13 (184)
20 d3grsa1 c.3.1.5 (A:18-165,A:29 22.7 6.9 0.0005 12.4 -0.4 29 375-408 5-33 (221)
21 d1w36c3 c.52.1.25 (C:818-1121) 22.6 11 0.00077 11.0 8.0 12 650-661 168-179 (304)
22 d1te7a_ b.122.1.7 (A:) Hypothe 22.0 11 0.00078 11.0 0.4 64 856-919 26-93 (103)
23 d1ebda1 c.3.1.5 (A:7-154,A:272 20.1 8.4 0.00061 11.7 -0.4 22 570-591 119-140 (223)
No 1
>g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
Probab=100.00 E-value=0 Score=410.06 Aligned_cols=424 Identities=24% Similarity=0.315 Sum_probs=292.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999999998699775899999999831584248999998617989998071019999999999984100246
Q 537021.9.peg.4 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206 (952)
Q Consensus 127 ~~~~~~~~~~y~~~k~~~~~ldf~Dl~~~a~~lL~~~~~~~~~~~~l~~~~~~ilVDEfQDT~~~Q~~il~~L~~~~~~~ 206 (952)
......++..|.+.+...+.+||+|++..+..+++..+. ++..+..+|+||+|||||||+++|++++..|..
T Consensus 167 ~~~~~~~~~~y~~~~~~~~~i~~~d~~~~~~~~~~~~~~---i~~~~~~~~~~i~vDE~QD~~~~q~~~~~~l~~----- 238 (623)
T g1qhh.1 167 EKVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVPD---VLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAE----- 238 (623)
T ss_dssp HHHHHHHHHHHHHHHHHTTEECTTHHHHHHHHHHHHSHH---HHHHHHHHCCEEEESCGGGCCHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHH---HHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHC-----
T ss_conf 999999999999999976998836789999998740999---998631242476402345415789999999734-----
Q ss_pred CCCCCCCCEEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 76667686499996665676542488847899999996652134576531200686668878999999999711210012
Q 537021.9.peg.4 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 (952)
Q Consensus 207 ~~~~~~~~~l~~VGD~kQSIY~FRGAd~~~~~~~~~~f~~~~~~~~~~~~~~~L~~N~RS~~~Ii~~~N~~f~~~~~~~~ 286 (952)
...++++|||||||||+||||++..|.++...++ ..+.+.|++||||.+.|++++|.++........
T Consensus 239 -----~~~~l~~~gd~~q~iy~f~ga~~~~~~~~~~~~~--------~~~~~~L~~~~R~~~~i~~~~~~l~~~~~~~~~ 305 (623)
T g1qhh.1 239 -----RFQNICAVGDADQSIYRWRGADIQNILSFERDYP--------NAKVILLEQNYRSTKRILQAANEVIEHNVNRKP 305 (623)
T ss_dssp -----TTCCEEEEECGGGCCCGGGTCCTHHHHHHHHHST--------TCEEEEECBCSSSCHHHHHHHHHHHTTCSSCCC
T ss_pred -----CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCC--------CCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf -----5574798504654324667888899999987556--------766999013325443165678877643024564
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 33221222122334478887436511344432233431011111000111333368889999999999998358622125
Q 537021.9.peg.4 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 (952)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~I~~l~~~~~~~~~~ 366 (952)
... . .....+..+.+ .........+..+...+..++..+.
T Consensus 306 ~~~--------~-~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~----- 345 (623)
T g1qhh.1 306 KRI--------W-TENPEGKPILY--------------------------YEAMNEADEAQFVAGRIREAVERGE----- 345 (623)
T ss_dssp CCC--------B-CSSCCCCCEEE--------------------------EEEEEHHHHHHHHHHHHHHHHTTTS-----
T ss_pred CCC--------C-CCCCCCCCEEE--------------------------EECCCHHHHHHHHHHHHHHHHHCCC-----
T ss_conf 300--------4-01368985489--------------------------8416577777765445789997389-----
Q ss_pred CCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCCC
Q ss_conf 43687824468986153101224899999874169736604862112331052268768887481311024543058774
Q 537021.9.peg.4 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446 (952)
Q Consensus 367 ~~r~~~~~diaVL~r~~~~~~~~~~~l~al~~~~~ip~~~~~~~~~~~~~~v~~l~a~l~~l~~p~~~~~~~~~L~spl~ 446 (952)
+.+.|++||+|++.+...+...| ...+||+...++..+++++++++++++++++.+|.++.++..++.++..
T Consensus 346 ----~~~~d~aiL~r~~~~~~~l~~~L----~~~~ip~~~~~~~~~~~~~ei~~i~~~l~~~~~~~d~~a~~~~l~~~~~ 417 (623)
T g1qhh.1 346 ----RRYRDFAVLYRTNAQSRVMEEML----LKANIPYQIVGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKR 417 (623)
T ss_dssp ----CCGGGEEEEESSGGGHHHHHHHH----HHTTCCEEESSSCCGGGSHHHHHHHHHHHHHHCTTCHHHHHHHTTSSCC
T ss_pred ----CCCCCEEEEEECHHHHHHHHHHH----HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC
T ss_conf ----88556489982528799999999----9779999996897602459999999999998098866999999846301
Q ss_pred CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHCCCH---
Q ss_conf 78888999987301268657888764311115899999999999998642199899999998503469999811352---
Q 537021.9.peg.4 447 NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN--- 523 (952)
Q Consensus 447 g~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--- 523 (952)
++............ ....................................+...++...............
T Consensus 418 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (623)
T g1qhh.1 418 GIGASTIDLFEALG------ELEMIGLGAKAAGALAAFRSQLEQWTQLQEYVSVTELVEEVLDKSGYREMLKAERTIEAQ 491 (623)
T ss_dssp TTTSCCC-CHHHHH------THHHHCCTTHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHTSHHHHHHHHCSHHHH
T ss_pred CCCCHHHHHHHHHH------HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHCCCHHHH
T ss_conf 23301111366666------542000456665566788988888888863134689999999852709898630355688
Q ss_pred HHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEECHHHCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf 3899999999999998520-568989999988501001321123578853030012214567777998158877677654
Q 537021.9.peg.4 524 EVIDVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602 (952)
Q Consensus 524 ~~~~~l~~l~~~a~~~e~~-~~~~l~~f~~~l~~~~~~~~~~~~~~~d~V~imTiH~SKGLEfpvV~i~~l~~~~~~~~~ 602 (952)
........++..+..++.. ....+..|+..+.. ..+++|+|||||+|||||||+|||+|+.++.+|+..
T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----------~~~~~V~l~TiH~aKGlE~D~Vii~~~~~~~~P~~~ 561 (623)
T g1qhh.1 492 SRLENLDEFLSVTKHFENVSDDKSLIAFLTDLAL----------ISGDAVMLMTLHAAKGLEFPVVFLIGMEEGIFPHNR 561 (623)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCCCHHHHHHHTTT----------CCCCCEEEEEGGGGTTCCEEEEEECCCBTBTTTBTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH----------CCCCCEEEEEHHHHHCCCCCEEEEECCCCCCCCCCC
T ss_conf 8899999999999998743871159999998750----------679956997776320256888999656169887634
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
Q ss_conf 4422234455566663123544457874779999999764444678878751146652899983167
Q 537021.9.peg.4 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669 (952)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ee~RLlYVAlTRAk~~L~l~~~~~ 669 (952)
... .....+||+|||||||||||++|+|+.+..
T Consensus 562 ~~~----------------------------------~~~~~~EErRLlYVA~TRA~~~L~i~~~~~ 594 (623)
T g1qhh.1 562 SLE----------------------------------DDDEMEEERRLAYVGITRAEEELVLTSAQM 594 (623)
T ss_dssp TTT----------------------------------CHHHHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCC----------------------------------CCHHHHHHHHHHHHHHHHHHHEEEEEEECC
T ss_conf 579----------------------------------835489999999978967845659987370
No 2
>d1w36b2 c.37.1.19 (B:486-880) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=3.3e-43 Score=326.18 Aligned_cols=298 Identities=17% Similarity=0.189 Sum_probs=207.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCC-----CCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEE-ECCC
Q ss_conf 13333688899999999999983586-----22125436878244689861531012248999998741697366-0486
Q 537021.9.peg.4 336 LPQESSASILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV-GNDR 409 (952)
Q Consensus 336 ~~~~~~~~~~a~~i~~~I~~l~~~~~-----~~~~~~~r~~~~~diaVL~r~~~~~~~~~~~l~al~~~~~ip~~-~~~~ 409 (952)
..........|+.+|.+|++|++.+. ....+..|+++|+|||||||++++...+...| ..+|||++ ..++
T Consensus 24 ~~~~~~~~~~A~~~A~~I~~ll~~~~~~~~~~~~~~~~r~v~~~DIAILvR~~~~~~~i~~aL----~~~gIP~v~~~~~ 99 (395)
T d1w36b2 24 CGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDAL----TLLEIPSVYLSNR 99 (395)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTEEEECCGGGEEEEESSHHHHHHHHHHH----HTTTCCEEETTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCEEEEEECCHHHHHHHHHH----HHCCCCEEEECCC
T ss_conf 551309999999999999999971203653004677767788143899983766699999999----9859985993587
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21123310522687688874813110245430587747888899998730126865788876431111589999999999
Q 537021.9.peg.4 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489 (952)
Q Consensus 410 ~~~~~~~~v~~l~a~l~~l~~p~~~~~~~~~L~spl~g~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 489 (952)
.++++++++++++++|+++.+|.+...+..+|.+|++|++..++..+.... ..+......+.
T Consensus 100 ~~l~~~~ev~~llalL~~l~~p~d~~~l~~~L~sp~~gl~~~~l~~~~~~~------------------~~~~~~~~~~~ 161 (395)
T d1w36b2 100 DSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDE------------------HAWDVVVEEFD 161 (395)
T ss_dssp CBGGGSSHHHHHHHHHHHHTCTTSHHHHHHHHHSGGGTCCHHHHHHHHHCH------------------HHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCH------------------HHHHHHHHHHH
T ss_conf 543256999999999997745564788999870855699999999875126------------------77999999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHCCHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC-------CC
Q ss_conf 9998642199899999998503469999811352-389999999999999852056898999998850100-------13
Q 537021.9.peg.4 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN-EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP-------TI 561 (952)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~l~~l~~~a~~~e~~~~~~l~~f~~~l~~~~~-------~~ 561 (952)
.++...........+..+.........+....+. ....++..+.+.+.. ......++..|+.|+..... ..
T Consensus 162 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~e~l~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 240 (395)
T d1w36b2 162 GYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQE-AGTQLESEHALVRWLSQHILEPDSNASSQ 240 (395)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHTTHHHHHHHSSSHHHHHHHHHHHHHHHHH-HHTTCSCHHHHHHHHHHHHHSCCCCSTTB
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 99999986342589999998754999998636717999999989999999-98745778899999999986143231233
Q ss_pred CCCCCCCCCCCEEECHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 21123578853030012214567777998158877677654442223445556666312354445787477999999976
Q 537021.9.peg.4 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641 (952)
Q Consensus 562 ~~~~~~~~d~V~imTiH~SKGLEfpvV~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (952)
......+.|+|+|||||+|||||||+||||+++++.++....... ......... ...........+.
T Consensus 241 ~~~~~~~~daV~ImTIHkSKGLEfpvVflp~l~~~~~~~~~~~~~-----~~~~~~~~~--------~~~~~~~~~~~~~ 307 (395)
T d1w36b2 241 QMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHD-----RHSFEAVLD--------LNAAPESVDLAEA 307 (395)
T ss_dssp CCCCTTGGGSEEEEETTTTSSCCEEEEEETTTTCCCCCCSCEEEC-----TTTCCEEEE--------SSCCHHHHHHHHH
T ss_pred HCCCCCCCCEEEEECHHHHCCCCCCEEEECCCCCCCCCCCCCCCC-----CCCCCCCCC--------CCCCHHHHHHHHH
T ss_conf 101102565089971145306777789971676688865566665-----555322257--------6646557889889
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCC
Q ss_conf 4444678878751146652899983167
Q 537021.9.peg.4 642 STQEEYNRLLYVGMTRASDQLIICKHSN 669 (952)
Q Consensus 642 ~~~~Ee~RLlYVAlTRAk~~L~l~~~~~ 669 (952)
+..+|++|||||||||||++|||++...
T Consensus 308 e~~~Ee~RLlYVAlTRAk~~L~l~~~~~ 335 (395)
T d1w36b2 308 ERLAEDLRLLYVALTRSVWHCSLGVAPL 335 (395)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHEEEECCC
T ss_conf 9999997454645734726118997555
No 3
>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=9.6e-39 Score=293.91 Aligned_cols=143 Identities=23% Similarity=0.388 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECHHCCCHHHHHHHHHHHHH
Q ss_conf 68999999999999999999869977589999999983158424899999861798999807101999999999998410
Q 537021.9.peg.4 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202 (952)
Q Consensus 123 ~~~l~~~~~~~~~~y~~~k~~~~~ldf~Dl~~~a~~lL~~~~~~~~~~~~l~~~~~~ilVDEfQDT~~~Q~~il~~L~~~ 202 (952)
...+..++..++..|++.|+++|.+||+||+..+.+++.++. .+.++.+++.+|+|||||||||||++||+||+.|+..
T Consensus 325 ~~~~~~~~~~~~~~y~~~k~~~~~lDf~Dl~~~~~~~l~~~~-~~~~~~~l~~~~~~ilVDEfQDts~~Q~~ll~~L~~~ 403 (485)
T d1w36b1 325 DLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSES-GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH 403 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTEECHHHHHHHHHHHHHSTT-HHHHHHHHHHHCSEEEECSGGGCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC-HHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHC
T ss_conf 889999999999999999998188652889999887653032-8999999723478687112012799999999999807
Q ss_pred CCCCCCCCCCCCEEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 02467666768649999666567654248884789999999665213457653120068666887899999999971121
Q 537021.9.peg.4 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282 (952)
Q Consensus 203 ~~~~~~~~~~~~~l~~VGD~kQSIY~FRGAd~~~~~~~~~~f~~~~~~~~~~~~~~~L~~N~RS~~~Ii~~~N~~f~~~~ 282 (952)
..++++|+||||||||||||||||.+|.++...+. ..+.|++||||+++||+++|.+|.+.+
T Consensus 404 --------~~~~~l~~VGD~kQSIY~FRgad~~~f~~~~~~~~----------~~~~L~~nyRS~~~Ii~~~N~~f~~~~ 465 (485)
T d1w36b1 404 --------QPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH----------AHYTLDTNWRSAPGMVNSVNKLFSQTD 465 (485)
T ss_dssp --------CTTCEEEEEECGGGCCCGGGTCCHHHHHHHHHHCC----------CEEECCEETTSCHHHHHHHHHHHHSSS
T ss_pred --------CCCCEEEEEECCCCHHCCCCCCCHHHHHHHHHCCC----------CEEECCCCCCCCHHHHHHHHHHHHCCC
T ss_conf --------99986999846710014566889799998775558----------767798999982999999999996497
Q ss_pred CC
Q ss_conf 00
Q 537021.9.peg.4 283 NA 284 (952)
Q Consensus 283 ~~ 284 (952)
..
T Consensus 466 ~~ 467 (485)
T d1w36b1 466 DA 467 (485)
T ss_dssp ST
T ss_pred CC
T ss_conf 54
No 4
>d1uaaa2 c.37.1.19 (A:308-640) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}
Probab=100.00 E-value=1.5e-32 Score=248.93 Aligned_cols=279 Identities=16% Similarity=0.229 Sum_probs=180.5
Q ss_pred HHHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHH
Q ss_conf 889999999999998-3586221254368782446898615310122489999987416973660486211233105226
Q 537021.9.peg.4 343 SILARRIAYTISNMI-GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421 (952)
Q Consensus 343 ~~~a~~i~~~I~~l~-~~~~~~~~~~~r~~~~~diaVL~r~~~~~~~~~~~l~al~~~~~ip~~~~~~~~~~~~~~v~~l 421 (952)
...+++|+.+|..++ .+| ++++|||||||+++++..+...|. .+|||+...++.+++++++++++
T Consensus 14 ~~E~~~i~~~I~~~~~~~g----------~~~~DIAILvR~~~~~~~l~~~L~----~~gIP~~~~~~~~~~~~~~i~~l 79 (333)
T d1uaaa2 14 EHEAERVTGELIAHHFVNK----------TQYKDYAILYRGNHQSRVFEKFLM----QNRIPYKISGGTSFFSRPEIKDL 79 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHC----------CCTTTEEEEESSSGGGTTHHHHHH----HTTCCEEESCCCCGGGCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCC----------CCHHCEEEEEECCHHHHHHHHHHH----HCCCCEEEECCCCCCCCHHHHHH
T ss_conf 9999999999999998569----------982138999968274999999999----87998899678531000144455
Q ss_pred HHHHHHHHCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHH-HHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8768887481311024543058774788889999873012686578-8876------43111158999999999999986
Q 537021.9.peg.4 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-EYIQ------KFANCGISKFQHVIKYIHELIHI 494 (952)
Q Consensus 422 ~a~l~~l~~p~~~~~~~~~L~spl~g~~~~~l~~l~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~~l~~~~~~ 494 (952)
+++++++..|.+...+..++.++.++.....+..+........... .... ................+..+...
T Consensus 80 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (333)
T d1uaaa2 80 LAYLRVLTNPDDDSAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMFTASFDMGLSQTLSGRGYEALTRFTHWLAEIQRL 159 (333)
T ss_dssp HHHHHHHHCTTCHHHHHHHSSTTCCCCCHHHHHHHHHHHHHTTSCHHHHTTCTTHHHHSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 65420212220578888875374223321124677877663020167899998875401167787665588999999998
Q ss_pred HHCCCHHHHHHHHHHHCCHHHHHHHCC-C----HHHHHHHHHHHHHHHHHHHC----CCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 421998999999985034699998113-5----23899999999999998520----56898999998850100132112
Q 537021.9.peg.4 495 AQFCSPHDFFTLILGAKKGRQQFISRF-G----NEVIDVLDEFLNFTLRNEQN----SYSSLQELISELEQYPPTIKRAH 565 (952)
Q Consensus 495 ~~~~~~~~~~~~~l~~~~~~~~~~~~~-~----~~~~~~l~~l~~~a~~~e~~----~~~~l~~f~~~l~~~~~~~~~~~ 565 (952)
..... ......+.............. . .....++..+++....+... .......++..............
T Consensus 160 ~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (333)
T d1uaaa2 160 AEREP-IAAVRDLIHGMDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGSELDEPMTLTQVVTRFTLRDMMERGES 238 (333)
T ss_dssp HTTCH-HHHHHHHHHHHTHHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHTTCCCCC---
T ss_pred HHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 74285-14688999987366777875300056999998478789999987532023312567899999986443320210
Q ss_pred CCCCCCCEEECHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 35788530300122145677779981588776776544422234455566663123544457874779999999764444
Q 537021.9.peg.4 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645 (952)
Q Consensus 566 ~~~~d~V~imTiH~SKGLEfpvV~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (952)
....++|+|||||+|||||||+||++|+.++.+|... ......++
T Consensus 239 ~~~~~~V~l~TiH~sKGlE~~~V~i~g~~~~~~p~~~-----------------------------------~~~~~~le 283 (333)
T d1uaaa2 239 EEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLPHQS-----------------------------------SIDEDNID 283 (333)
T ss_dssp CCCCCSEEEEESTTTSSCCEEEEEECCCBSSTTTTHH-----------------------------------HHTTTCCH
T ss_pred HCCCCCEEEEEHHHHHCCCCCEEEECCCCCCCCCCCC-----------------------------------CCCCCCHH
T ss_conf 1157857995113321257882672486468785500-----------------------------------18843189
Q ss_pred HHHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf 67887875114665289998316777
Q 537021.9.peg.4 646 EYNRLLYVGMTRASDQLIICKHSNTS 671 (952)
Q Consensus 646 Ee~RLlYVAlTRAk~~L~l~~~~~~~ 671 (952)
|||||||||||||+++|||+++....
T Consensus 284 EerRL~YVA~TRA~~~L~is~~~~~~ 309 (333)
T d1uaaa2 284 EERRLAYVGITRAQKELTFTLCKERR 309 (333)
T ss_dssp HHHHHHHHHHHTEEEEEEEEECSSCC
T ss_pred HHHHHHHHHHHHHHHEEEEEEECCCC
T ss_conf 99988572698885646988822020
No 5
>d1pjra2 c.37.1.19 (A:319-651) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
Probab=100.00 E-value=3.2e-32 Score=246.63 Aligned_cols=295 Identities=22% Similarity=0.291 Sum_probs=193.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHH
Q ss_conf 89999999999998358622125436878244689861531012248999998741697366048621123310522687
Q 537021.9.peg.4 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423 (952)
Q Consensus 344 ~~a~~i~~~I~~l~~~~~~~~~~~~r~~~~~diaVL~r~~~~~~~~~~~l~al~~~~~ip~~~~~~~~~~~~~~v~~l~a 423 (952)
..|++|+.+|.+++++|. ++++|||||||+++++..+...| ..+|||+...++..++++++++++++
T Consensus 13 ~Ea~~Ia~~I~~li~~g~---------~~~~DIAILvRt~~~~~~i~~~L----~~~gIP~~~~~~~~~~~~~~i~~l~~ 79 (333)
T d1pjra2 13 DEAQFVAGRIREAVERGE---------RRYRDFAVLYRTNAQSRVMEEML----LKANIPYQIVGGLKFYDRKEIKDILA 79 (333)
T ss_dssp HHHHHHHHHHHHHHTTTS---------CCGGGEEEEESSGGGHHHHHHHH----HHTTCCEEEETSCCGGGSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC---------CCCCCEEEEEECCHHHHHHHHHH----HHCCCCEEEECCCCCCCCHHHHHHHH
T ss_conf 999999999999998699---------89288899987837499999999----98799989968865441679989999
Q ss_pred HHHHHHCCCCCHHHHHHCCCCCCCCCHHHHHHHHHH-----CCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 688874813110245430587747888899998730-----1268657888-7643111158999999999999986421
Q 537021.9.peg.4 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ-----RHETETVYEY-IQKFANCGISKFQHVIKYIHELIHIAQF 497 (952)
Q Consensus 424 ~l~~l~~p~~~~~~~~~L~spl~g~~~~~l~~l~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 497 (952)
+++++.+|.+...+..++.+|..+............ ......+... ...........+......+.........
T Consensus 80 ~l~~l~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (333)
T d1pjra2 80 YLRVIANPDDDLSLLRIINVPKRGIGASTIDKLVRYAADHELSLFEALGELEMIGLGAKAAGALAAFRSQLEQWTQLQEY 159 (333)
T ss_dssp HHHHHHCTTCHHHHHHHTTSSCCTTTSCCCC------------CTTTTTSHHHHCCTTTTTTTTHHHHHHHHHHHHHTTT
T ss_pred HHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998455411556653068631122118889887765316748899987654332255555556789999988887764
Q ss_pred CCHHHHHHHHHHHCCHHHHHHHCCCHHHH---HHHHHHHHHHHHH-HHCCCCCHHHHHHHHHHCCCCC---CCCCCCCCC
Q ss_conf 99899999998503469999811352389---9999999999998-5205689899999885010013---211235788
Q 537021.9.peg.4 498 CSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTI---KRAHSANHN 570 (952)
Q Consensus 498 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~l~~l~~~a~~~-e~~~~~~l~~f~~~l~~~~~~~---~~~~~~~~d 570 (952)
.....++..++...+....+......+.. .....+.+.+... .......+..|+.......... ......+.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (333)
T d1pjra2 160 VSVTELVEEVLDKSGYREMLKAERTIEAQSRLENLDEFLSVTKHFENVSDDKSLIAFLTDLALISDLDELDGTEQAAEGD 239 (333)
T ss_dssp SCHHHHHHHHHHHTSHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHHHHTTTCC-------------CC
T ss_pred HHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHCCCCCCCCCC
T ss_conf 44589999999860727676521687789989877768999997551273356999999977531000000113346699
Q ss_pred CCEEECHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 53030012214567777998158877677654442223445556666312354445787477999999976444467887
Q 537021.9.peg.4 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 (952)
Q Consensus 571 ~V~imTiH~SKGLEfpvV~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ee~RL 650 (952)
+|+|||+|+|||||||+||++|+..+.+|..... .....++||+||
T Consensus 240 ~V~i~T~h~sKgle~~~v~~~g~~~~~~p~~~~~----------------------------------~~~~~l~EErRL 285 (333)
T d1pjra2 240 AVMLMTLHAAKGLEFPVVFLIGMEEGIFPHNRSL----------------------------------EDDDEMEEERRL 285 (333)
T ss_dssp CEEEEEGGGGTTCCEEEEEECCCBTBTTTBGGGG----------------------------------TCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHCCCCEEECCCCCCCCCHHHCC----------------------------------CCCHHHHHHHHH
T ss_conf 6886230112022255302148766879323313----------------------------------882538999999
Q ss_pred HHHHCCCCCCEEEEEECCCCC---CCCCCCCCCCHHHH
Q ss_conf 875114665289998316777---76665432106887
Q 537021.9.peg.4 651 LYVGMTRASDQLIICKHSNTS---NEKKSNQRTWYDMV 685 (952)
Q Consensus 651 lYVAlTRAk~~L~l~~~~~~~---~~~~~~~~~~~~~~ 685 (952)
||||||||++.|||+++.... ......++.+...+
T Consensus 286 lYVA~TRAk~~L~is~~~~~~~~g~~~~~~pS~Fl~el 323 (333)
T d1pjra2 286 AYVGITRAEEELVLTSAQMRTLFGNIQMDPPSRFLNEI 323 (333)
T ss_dssp HHHHHTTEEEEEEEEEEEEEEETTEEECCCBCHHHHHS
T ss_pred HHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCHHHHHH
T ss_conf 99899989774799885502337786469889638874
No 6
>d1w36c2 c.37.1.19 (C:348-817) Exodeoxyribonuclease V gamma chain (RecC), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.96 E-value=3.4e-28 Score=217.47 Aligned_cols=312 Identities=13% Similarity=0.096 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH----HHCCCCEEECCCCCCCCCC
Q ss_conf 688899999999999983586221254368782446898615310122489999987----4169736604862112331
Q 537021.9.peg.4 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK----NDYKISVVGNDRFILTDHL 416 (952)
Q Consensus 341 ~~~~~a~~i~~~I~~l~~~~~~~~~~~~r~~~~~diaVL~r~~~~~~~~~~~l~al~----~~~~ip~~~~~~~~~~~~~ 416 (952)
.....++.|+..|.+++.... .++|+||+||+|.... +...+.+.+ ...+||+...++..+.+++
T Consensus 34 ~~~rEvE~l~~~I~~~l~~~~--------~~~~~DIaVl~r~~~~---Y~~~I~~vF~~~~~~~~IPy~i~~~~~~~~~p 102 (470)
T d1w36c2 34 SPQREVEVLHDRLLAMLEEDP--------TLTPRDIIVMVADIDS---YSPFIQAVFGSAPADRYLPYAISDRRARQSHP 102 (470)
T ss_dssp SHHHHHHHHHHHHHHHHHHST--------TCCGGGEEEEESCHHH---HHHHHHHHTSCCSSTTCCCCEECSEETGGGCH
T ss_pred CHHHHHHHHHHHHHHHHHHCC--------CCCCCEEEEECCCHHH---HHHHHHHHHHCCCCCCCCCEEEECCCCCCCCH
T ss_conf 869999999999999997785--------9790507888597688---79999999815443578786985884122179
Q ss_pred CHHHHHHHHHHHHCCCCCHHHHHHCCCCC----CCCCHHHHHHHHHHCCC---C------------------CCHHHHHH
Q ss_conf 05226876888748131102454305877----47888899998730126---8------------------65788876
Q 537021.9.peg.4 417 AIKDLMALGRFILSQEDDLSFVCMLKSPL----FNFSEDDIFKICTQRHE---T------------------ETVYEYIQ 471 (952)
Q Consensus 417 ~v~~l~a~l~~l~~p~~~~~~~~~L~spl----~g~~~~~l~~l~~~~~~---~------------------~~~~~~~~ 471 (952)
.+..++++|+++.++.+...+..+|.+|. +|++..++..+...... . .++.....
T Consensus 103 ~i~~ll~lL~l~~~~~~~~~l~~lL~~p~~~~~~~i~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~ 182 (470)
T d1w36c2 103 VLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLT 182 (470)
T ss_dssp HHHHHHHHTTGGGCCCCHHHHHHHTTSHHHHHHTTCCHHHHHHHHHHHHHHTCCSCSCHHHHHHTTCCCCSSSSHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHCCHHHHHH
T ss_conf 99999999997608998189999868715310258987799999999998454324678878760231010124998876
Q ss_pred H-------------------------HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHCCC----
Q ss_conf 4-------------------------31111589999999999999864219989999999850346999981135----
Q 537021.9.peg.4 472 K-------------------------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG---- 522 (952)
Q Consensus 472 ~-------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---- 522 (952)
. ........+..+...+..+............+...+.. .........
T Consensus 183 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~---~~~~~~~~~~~~~ 259 (470)
T d1w36c2 183 RMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRD---MLNAFFLPDAETE 259 (470)
T ss_dssp HHHHHHSSCSTTCCSSSCCCCTTSCSSTHHHHHHHHHHHHHHHHHHHHTSSCEEHHHHTTHHHH---HHHHHCCCCSHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH---HHHHHHHHHHHHH
T ss_conf 5433210001345553333465543357999999999999999999987344779999999998---8888741003456
Q ss_pred ---HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEECHHHCCCCCCCEEEECCCCCCCCC
Q ss_conf ---23899999999999998520568989999988501001321123578853030012214567777998158877677
Q 537021.9.peg.4 523 ---NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599 (952)
Q Consensus 523 ---~~~~~~l~~l~~~a~~~e~~~~~~l~~f~~~l~~~~~~~~~~~~~~~d~V~imTiH~SKGLEfpvV~i~~l~~~~~~ 599 (952)
....+.+..+++.+.........++..|...+...............|+|+|||+|.+||||||+|||+|++++.+|
T Consensus 260 ~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~d~V~v~tih~akglef~vVfl~Gl~eg~fP 339 (470)
T d1w36c2 260 AAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYP 339 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCSEECHHHHHHHHHHHHHHCEECTTTTSSSCEEECCCTTCCCCEEEEEEECCBTTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCHHHCCCCCCEEEEEEECCCEEE
T ss_conf 78999999999999999975113313699999999854321002445756783773315324888888999983376120
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC-CCCCCCC
Q ss_conf 654442223445556666312354445787477999999976444467887875114665289998316777-7666543
Q 537021.9.peg.4 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS-NEKKSNQ 678 (952)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ee~RLlYVAlTRAk~~L~l~~~~~~~-~~~~~~~ 678 (952)
............... .. ......+|++||||||||||+++||||++.... .++...+
T Consensus 340 ~~~~~~~~~~~~~~~----------~~------------~~~~~~~eer~lfy~altrA~~~L~lSy~~~~~~~g~~~~P 397 (470)
T d1w36c2 340 RQLAPLGFDLMSQKP----------KR------------GDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFP 397 (470)
T ss_dssp CCCCCCSSCHHHHSC----------CT------------TCCCHHHHHHHHHHHHHHHEEEEEEEEEECBCSSSCCBCCB
T ss_pred CCCCCCHHHHHHHHH----------HC------------CCCHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCC
T ss_conf 555610000278877----------60------------66112478999999999844404999982465668797488
Q ss_pred CCCHHHHHHC
Q ss_conf 2106887310
Q 537021.9.peg.4 679 RTWYDMVYDS 688 (952)
Q Consensus 679 ~~~~~~~~~~ 688 (952)
+.+...+...
T Consensus 398 S~~i~el~~~ 407 (470)
T d1w36c2 398 SVLVQELIDY 407 (470)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
T ss_conf 7899999999
No 7
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
Probab=99.92 E-value=2.4e-24 Score=189.60 Aligned_cols=138 Identities=30% Similarity=0.420 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999999998699775899999999831584248999998617989998071019999999999984100246
Q 537021.9.peg.4 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206 (952)
Q Consensus 127 ~~~~~~~~~~y~~~k~~~~~ldf~Dl~~~a~~lL~~~~~~~~~~~~l~~~~~~ilVDEfQDT~~~Q~~il~~L~~~~~~~ 206 (952)
......++..|.......+.+|++|++..+..++...+. +...++.+|+||+|||+||++++|+++++.|..
T Consensus 170 ~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~iDE~QD~s~~q~~~~~~l~~----- 241 (318)
T d1pjra1 170 EKVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVPD---VLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAE----- 241 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTEECTTHHHHHHHHHHHHCHH---HHHHHHHHCSEEEESSGGGCCHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHH---HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_conf 999999999999999982787746789999988502799---999875203111038777778999999999987-----
Q ss_pred CCCCCCCCEEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 7666768649999666567654248884789999999665213457653120068666887899999999971121001
Q 537021.9.peg.4 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285 (952)
Q Consensus 207 ~~~~~~~~~l~~VGD~kQSIY~FRGAd~~~~~~~~~~f~~~~~~~~~~~~~~~L~~N~RS~~~Ii~~~N~~f~~~~~~~ 285 (952)
...+++++|||+|+||+||||++..|..+...|+ ..+.+.|++||||+++|++++|.+|.++..+.
T Consensus 242 -----~~~~~~~~gD~~Q~I~~f~ga~~~~~~~~~~~~~--------~~~~~~L~~nyRs~~~I~~~an~ll~~~~~r~ 307 (318)
T d1pjra1 242 -----RFQNICAVGDADQSIYRWRGADIQNILSFERDYP--------NAKVILLEQNYRSTKRILQAANEVIEHNVNRK 307 (318)
T ss_dssp -----TTCCEEEEECGGGCCCGGGTCCTHHHHTHHHHST--------TCEEEEECBCSSSCHHHHHHHHHHHTTCSSCC
T ss_pred -----HHCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCC--------CCEEEECCCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf -----6156356315653101466678599999998689--------98899799999976999999999997072247
No 8
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}
Probab=99.92 E-value=3.8e-24 Score=188.12 Aligned_cols=138 Identities=29% Similarity=0.442 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999999986997758999999998315842489999986179899980710199999999999841002467
Q 537021.9.peg.4 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207 (952)
Q Consensus 128 ~~~~~~~~~y~~~k~~~~~ldf~Dl~~~a~~lL~~~~~~~~~~~~l~~~~~~ilVDEfQDT~~~Q~~il~~L~~~~~~~~ 207 (952)
.....+...|...+...+.+||+|+...+.......+. ++..+..+|+||+|||+||+++.|++++..+++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~vDE~QD~~~~~~~~l~~~~~------ 231 (306)
T d1uaaa1 161 RIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQANEE---VRKRWQNKIRYLLVDEYQDTNTSQYELVKLLVG------ 231 (306)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEHHHHHHHHHHHHHHCHH---HHHHHHTTCSEEEESCGGGCBHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHHHHEECHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------
T ss_conf 89999999877766455322431677876666402878---999999975478777798730898862320026------
Q ss_pred CCCCCCCEEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 6667686499996665676542488847899999996652134576531200686668878999999999711210012
Q 537021.9.peg.4 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 (952)
Q Consensus 208 ~~~~~~~~l~~VGD~kQSIY~FRGAd~~~~~~~~~~f~~~~~~~~~~~~~~~L~~N~RS~~~Ii~~~N~~f~~~~~~~~ 286 (952)
.+.++++||||+||||+||||++..|..+...|+. .+.+.|++||||+++|++++|.+|.+++...+
T Consensus 232 ----~~~~~~~~GD~~Q~Iy~f~ga~~~~~~~~~~~~~~--------~~~~~L~~nyRs~~~I~~~an~l~~~n~~~~~ 298 (306)
T d1uaaa1 232 ----SRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA--------LKVIKLEQNYRSSGRILKAANILIANNPHVFE 298 (306)
T ss_dssp ----TTCCEEEECCGGGCCCGGGTBCTTHHHHHHHHSTT--------CEEECCCCBSSSCHHHHHHHHHHHHTSCCSSC
T ss_pred ----CCCCCEEEECCCCCEECCCCCCHHHHHHHHHHCCC--------CEEEECCCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf ----78741575347543101156776899999986899--------75997888889879999999999973942379
No 9
>d1w36b3 c.52.1.24 (B:899-1174) Exodeoxyribonuclease V beta chain (RecB), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.75 E-value=3.3e-18 Score=145.08 Aligned_cols=170 Identities=13% Similarity=0.129 Sum_probs=113.9
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHH------HHHHCCCCCCC
Q ss_conf 630155677999999985668996568999999985004589988999999999998629655------78717778561
Q 537021.9.peg.4 775 SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMM------TTAMSCDSYSE 848 (952)
Q Consensus 775 ~~~~a~~~Gt~vH~~lE~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~~E 848 (952)
..+.|+.+||++|.+||++++...... +.+.+.+.+.. ......+.+.+.+..++..+.. +.+.......|
T Consensus 46 ~FP~Ga~~Gt~lH~vlE~ldf~~~~~~-~~i~~~l~~~~--~~~~~~~~~~~~i~~~l~~pl~~~~~~L~~l~~~~~~~E 122 (276)
T d1w36b3 46 QFPRGASPGTFLHSLFEDLDFTQPVDP-NWVREKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVE 122 (276)
T ss_dssp GSCCSHHHHHHHHHHTTSCCSSSCCCH-HHHHHHHHHTT--CCGGGHHHHHHHHHHHHSSCSSSSSCCGGGCCGGGEEEE
T ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCCH-HHHHHHHHHCC--CCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHEEE
T ss_conf 389888533269999961787898999-99999999736--751018999999999984727787553664532331432
Q ss_pred EEEEEEEEC--------------------------CCCCEEEEEEEEEEEEECCEEEEEECCCCCCCCCCH----HH---
Q ss_conf 137888623--------------------------888589997977899979989999725801389998----99---
Q 537021.9.peg.4 849 VSVSGKINC--------------------------PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEI----EH--- 895 (952)
Q Consensus 849 v~~e~~~~~--------------------------~~~~~~i~G~IDri~~~~~~~~IiDyKT~~~~~~~~----~~--- 895 (952)
++|..++.. ....++|+|+||++|+.+|++||||||||+..++.. +.
T Consensus 123 ~~F~lpl~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~g~l~G~IDlvf~~~g~~~llDYKTn~Lg~~~~~Y~~~~l~~ 202 (276)
T d1w36b3 123 MEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAA 202 (276)
T ss_dssp EEEEEEECSCCCHHHHHHHHHHHCSSTTSCCCCCSCCCEEEEEEEEEEEEBSSSCBCCEEEECCCCCSSGGGSBHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEECCCCCCCCCCCCHHHHHH
T ss_conf 10241167410177899997523630013653332100663777889999999999999800565688734358999999
Q ss_pred --HHHHHHHHHHHHHHHHHHHC----CCCCEE-----EEEEECCC--------CEEEECCHHHHHHHHHHH
Q ss_conf --99988999999999999967----998278-----99998559--------878987989999999976
Q 537021.9.peg.4 896 --IPYTHIAQLSIYEKILKDSY----PNKSLV-----CLLIYVSE--------PKVFIIPQNKLNKAFAEI 947 (952)
Q Consensus 896 --~~~~Y~~QL~~Y~~al~~~~----p~~~V~-----~~l~y~~~--------~~~~~~~~~~l~~~~~~~ 947 (952)
..++|..|+.+|..||+++. |+.... .+.+|++. |-..+-|+.+|=.+|+++
T Consensus 203 ~m~~~~Y~lQ~~lY~~AL~R~L~~r~~~y~~~~~~GGv~YlFlRG~~~~~~~~Gv~~~~p~~~li~~ld~l 273 (276)
T d1w36b3 203 AMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEM 273 (276)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHHSSSCCHHHHCCCCEEEESSSCCTTCTTBSCCBCCCCSSHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEECCCCCCCCCCCEEEECCCHHHHHHHHHH
T ss_conf 99987688999999999999999766898776605758999967888999998679737999999999998
No 10
>d1w36d2 c.37.1.19 (D:361-606) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}
Probab=98.82 E-value=2e-09 Score=81.40 Aligned_cols=52 Identities=29% Similarity=0.307 Sum_probs=38.8
Q ss_pred CCCEEECHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 85303001221456777799815887767765444222344555666631235444578747799999997644446788
Q 537021.9.peg.4 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 (952)
Q Consensus 570 d~V~imTiH~SKGLEfpvV~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ee~R 649 (952)
+-.=-||||||.|.||+.|+++-- ....+. -.++
T Consensus 171 ~~ayA~TiHkaQGse~~~v~~~l~-~~~~~~---------------------------------------------~~r~ 204 (246)
T d1w36d2 171 ETTWAMTVHKSQGSEFDHAALILP-SQRTPV---------------------------------------------VTRE 204 (246)
T ss_dssp SSCSEEETTTTTTCCBSEEEEECC-SSCCSS---------------------------------------------SCHH
T ss_pred HHHEECCHHHHCCCCCCCCEECCC-CCCCCC---------------------------------------------CCHH
T ss_conf 231013378864677886356157-665601---------------------------------------------1030
Q ss_pred HHHHHCCCCCCEEEEEEC
Q ss_conf 787511466528999831
Q 537021.9.peg.4 650 LLYVGMTRASDQLIICKH 667 (952)
Q Consensus 650 LlYVAlTRAk~~L~l~~~ 667 (952)
|||||+||||++|+|.+.
T Consensus 205 l~YtaiTRAk~~~~l~~~ 222 (246)
T d1w36d2 205 LVYTAVTRARRRLSLYAD 222 (246)
T ss_dssp HHHHHHTTBSSCEEEECC
T ss_pred HHHHHHHHHHCEEEEEEC
T ss_conf 389998666676899987
No 11
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}
Probab=96.73 E-value=0.0061 Score=34.46 Aligned_cols=13 Identities=23% Similarity=0.245 Sum_probs=7.6
Q ss_pred CEEECHHHCCCCC
Q ss_conf 3030012214567
Q 537021.9.peg.4 572 VRIMTVHTAKGLE 584 (952)
Q Consensus 572 V~imTiH~SKGLE 584 (952)
...+|+|+..|..
T Consensus 234 ~~~~t~~~ll~~~ 246 (359)
T d1w36d1 234 EDASTLHRLLGAQ 246 (359)
T ss_dssp CCCBTTTSCC---
T ss_pred HHHHHHHHHHHHH
T ss_conf 3455789987631
No 12
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}
Probab=84.63 E-value=0.73 Score=19.44 Aligned_cols=40 Identities=28% Similarity=0.321 Sum_probs=27.8
Q ss_pred HHHHCCCCEEEEECHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEE
Q ss_conf 99861798999807101999999999998410024676667686499996
Q 537021.9.peg.4 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 (952)
Q Consensus 171 ~~l~~~~~~ilVDEfQDT~~~Q~~il~~L~~~~~~~~~~~~~~~~l~~VG 220 (952)
..+...+++|+|||.|=-+..|...+..+.. .+..+++-|
T Consensus 75 ~~~~~~~dvI~IDE~QFf~d~~~~~~~~l~~----------~g~~Viv~G 114 (141)
T d1xx6a1 75 KYFEEDTEVIAIDEVQFFDDEIVEIVNKIAE----------SGRRVICAG 114 (141)
T ss_dssp HHCCTTCSEEEECSGGGSCTHHHHHHHHHHH----------TTCEEEEEE
T ss_pred HHHCCCCCEEEEEEHHHCCCCHHHHHHHHEE----------CCCEEEEEE
T ss_conf 5421355699995012136307889875145----------795899999
No 13
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}
Probab=73.89 E-value=1.5 Score=17.09 Aligned_cols=25 Identities=40% Similarity=0.183 Sum_probs=13.6
Q ss_pred CCCEEEEECHHCCCHHHHHHHHHHH
Q ss_conf 7989998071019999999999984
Q 537021.9.peg.4 176 EINHILIDEVQDTSLIQWEVIRSLT 200 (952)
Q Consensus 176 ~~~~ilVDEfQDT~~~Q~~il~~L~ 200 (952)
.+++|+|||.|=-+.....++..+.
T Consensus 79 ~~dvI~IDE~QFf~d~i~~~~~~~~ 103 (139)
T d2b8ta1 79 ETKVIGIDEVQFFDDRICEVANILA 103 (139)
T ss_dssp TCCEEEECSGGGSCTHHHHHHHHHH
T ss_pred CCCEEEECHHHHCCHHHHHHHHHHH
T ss_conf 7679996103435615889999998
No 14
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=53.99 E-value=3.5 Score=14.51 Aligned_cols=35 Identities=23% Similarity=0.168 Sum_probs=21.0
Q ss_pred CCCCEEEEECHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEE
Q ss_conf 1798999807101999999999998410024676667686499996
Q 537021.9.peg.4 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 (952)
Q Consensus 175 ~~~~~ilVDEfQDT~~~Q~~il~~L~~~~~~~~~~~~~~~~l~~VG 220 (952)
..+++|+|||.|=-+.+ .++++.+.. .+.++++-|
T Consensus 72 ~~~d~I~IDEaQFf~dl-~~~~~~~~~----------~~~~Viv~G 106 (133)
T d1xbta1 72 LGVAVIGIDEGQFFPDI-VEFCEAMAN----------AGKTVIVAA 106 (133)
T ss_dssp HTCSEEEESSGGGCTTH-HHHHHHHHH----------TTCEEEEEC
T ss_pred CCCCEEEEEHHHHHHHH-HHHHHHHHH----------CCCCEEEEE
T ss_conf 35536873066777779-999999984----------398579998
No 15
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=48.23 E-value=4.2 Score=13.89 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=16.8
Q ss_pred CCCCEEEEECHHCCCHHHHHHHHHHH
Q ss_conf 17989998071019999999999984
Q 537021.9.peg.4 175 QEINHILIDEVQDTSLIQWEVIRSLT 200 (952)
Q Consensus 175 ~~~~~ilVDEfQDT~~~Q~~il~~L~ 200 (952)
..|++|+|||++-.+..+...+..+.
T Consensus 93 ~~~~~vIiDE~H~~~~~~~~~~~~~l 118 (136)
T d1a1va1 93 GAYDIIICDECHSTDATSILGIGTVL 118 (136)
T ss_dssp CCCSEEEEETTTCCSHHHHHHHHHHH
T ss_pred HCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 15999998255535887899999999
No 16
>d1xmxa_ c.52.1.26 (A:) Hypothetical protein VC1899 {Vibrio cholerae [TaxId: 666]}
Probab=35.00 E-value=6.6 Score=12.48 Aligned_cols=71 Identities=13% Similarity=0.108 Sum_probs=44.1
Q ss_pred EEEEEEECCCCCEEEEEEEEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC
Q ss_conf 37888623888589997977899979989999725801389998999998899999999999996799827899998559
Q 537021.9.peg.4 850 SVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSE 929 (952)
Q Consensus 850 ~~e~~~~~~~~~~~i~G~IDri~~~~~~~~IiDyKT~~~~~~~~~~~~~~Y~~QL~~Y~~al~~~~p~~~V~~~l~y~~~ 929 (952)
.+...+....++..+.--+|.++..++..++|-=||+.......+ +|--|....+++ .|..+++.|+-++-
T Consensus 276 ~~~v~i~~~~~~~~~~nElDv~~~~~~~l~~IECKt~~~~~~~~~--------~l~kl~~l~~~l-gG~~~r~~LVs~~~ 346 (385)
T d1xmxa_ 276 SLNVQVYRQLGEREVRNELDVATVVNNKLHIIECKTKGMRDDGDD--------TLYKLESLRDLL-GGLQARAMLVSFRP 346 (385)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEETTEEEEEEEESSCCCC-CCC--------HHHHHHHHHHHH-HGGGCEEEEEESSC
T ss_pred EEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEECCCCCCCCHHH--------HHHHHHHHHHHH-CCCCCEEEEEEECC
T ss_conf 767798326888765532689999799999999568887754578--------899999999982-89532499999058
No 17
>d1avqa_ c.52.1.13 (A:) lambda exonuclease {Bacteriophage lambda [TaxId: 10710]}
Probab=29.08 E-value=8.2 Score=11.81 Aligned_cols=80 Identities=13% Similarity=0.059 Sum_probs=43.4
Q ss_pred CCEEEEEEEEEEEEECCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC---CC
Q ss_conf 8589997977899979989999725801389-------9989999988999999999999967998278999985---59
Q 537021.9.peg.4 860 KDIIISGRIDQISISQQNIFIFEYKTHHHVP-------QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV---SE 929 (952)
Q Consensus 860 ~~~~i~G~IDri~~~~~~~~IiDyKT~~~~~-------~~~~~~~~~Y~~QL~~Y~~al~~~~p~~~V~~~l~y~---~~ 929 (952)
..-.+.+..|.+..+++ ++..||-.... ...+.++..|..|+..|..+. +.+..-+.+|. ..
T Consensus 112 ~~~~l~aSpDGl~~~~~---~lEIKcp~~~~~~~~~~~~~~~~ip~~Y~~QvQ~qM~vt-----g~~~~~fv~~~p~~~~ 183 (228)
T d1avqa_ 112 ESMRTACSPDGLCSDGN---GLELKCPFTSRDFMKFRLGGFEAIKSAYMAQVQYSMWVT-----RKNAWYFANYDPRMKR 183 (228)
T ss_dssp TTCSEEECCSEEETTSC---EEEEECCSSHHHHHHHHHHCGGGSCHHHHHHHHHHHHHH-----TCSEEEEEEECTTCSS
T ss_pred CCCEEEECCCCCCCCCC---EEEEECCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHC-----CCCEEEEEEECCCCCC
T ss_conf 56605654674103684---289973543321000001566789899999999999821-----8977999998247899
Q ss_pred C--EEEEC--CHHHHHHHHHHH
Q ss_conf 8--78987--989999999976
Q 537021.9.peg.4 930 P--KVFII--PQNKLNKAFAEI 947 (952)
Q Consensus 930 ~--~~~~~--~~~~l~~~~~~~ 947 (952)
. .+++| +.+-.+..+.++
T Consensus 184 ~~~~~~~i~rD~~~i~~l~~~~ 205 (228)
T d1avqa_ 184 EGLHYVVIERDEKYMASFDEIV 205 (228)
T ss_dssp CCEEEEEEECCHHHHHHHHHHH
T ss_pred CCEEEEEEECCHHHHHHHHHHH
T ss_conf 8558999988999999999999
No 18
>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=27.81 E-value=4.5 Score=13.72 Aligned_cols=18 Identities=11% Similarity=0.100 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHCCCCEEECC
Q ss_conf 48999998741697366048
Q 537021.9.peg.4 389 ITFLTRFLKNDYKISVVGND 408 (952)
Q Consensus 389 ~~~~l~al~~~~~ip~~~~~ 408 (952)
+..++.+ .+.|..+...+
T Consensus 16 l~aA~~a--a~~G~kV~viE 33 (235)
T d1h6va1 16 LAAAKEA--AKFDKKVMVLD 33 (235)
T ss_dssp HHHHHHH--GGGCCCEEEEC
T ss_pred HHHHHHH--HHCCCEEEEEE
T ss_conf 9999999--97899699993
No 19
>d2joka1 a.168.1.1 (A:78-261) Effector protein BopE {Burkholderia pseudomallei [TaxId: 28450]}
Probab=23.93 E-value=9 Score=11.54 Aligned_cols=13 Identities=46% Similarity=0.652 Sum_probs=9.7
Q ss_pred EECCHHHHHHHCC
Q ss_conf 9666567654248
Q 537021.9.peg.4 219 VGDEKQSIYSFHG 231 (952)
Q Consensus 219 VGD~kQSIY~FRG 231 (952)
.||+||.|-.|--
T Consensus 1 ~gd~k~~ir~~~d 13 (184)
T d2joka1 1 TGDAKQAIRHFVD 13 (184)
T ss_dssp CTTTTTHHHHHHH
T ss_pred CCCHHHHHHHHHH
T ss_conf 9748999999999
No 20
>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.74 E-value=6.9 Score=12.37 Aligned_cols=29 Identities=14% Similarity=0.056 Sum_probs=10.5
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHCCCCEEECC
Q ss_conf 4689861531012248999998741697366048
Q 537021.9.peg.4 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408 (952)
Q Consensus 375 diaVL~r~~~~~~~~~~~l~al~~~~~ip~~~~~ 408 (952)
|+.|+- .....+..++.+ .+.|..+...+
T Consensus 5 DviIIG---~GpaG~~aA~~a--ar~G~kV~vIE 33 (221)
T d3grsa1 5 DYLVIG---GGSGGLASARRA--AELGARAAVVE 33 (221)
T ss_dssp SEEEEC---CSHHHHHHHHHH--HHTTCCEEEEE
T ss_pred CEEEEC---CCHHHHHHHHHH--HHCCCEEEEEE
T ss_conf 989989---799999999999--97799799996
No 21
>d1w36c3 c.52.1.25 (C:818-1121) Exodeoxyribonuclease V beta chain (RecC), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=22.65 E-value=11 Score=11.00 Aligned_cols=12 Identities=17% Similarity=0.379 Sum_probs=5.9
Q ss_pred HHHHHCCCCCCE
Q ss_conf 787511466528
Q 537021.9.peg.4 650 LLYVGMTRASDQ 661 (952)
Q Consensus 650 LlYVAlTRAk~~ 661 (952)
|++-|+..+...
T Consensus 168 L~~~a~~~~~~t 179 (304)
T d1w36c3 168 LVYCASGGNGES 179 (304)
T ss_dssp HHHHHTSCCCEE
T ss_pred HHHHHCCCCCCE
T ss_conf 999854999971
No 22
>d1te7a_ b.122.1.7 (A:) Hypothetical protein YqfB {Escherichia coli [TaxId: 562]}
Probab=21.97 E-value=11 Score=10.97 Aligned_cols=64 Identities=13% Similarity=0.271 Sum_probs=36.4
Q ss_pred ECCCCCEEEEEEEEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHH----HHHHHHHHHHHCCCCC
Q ss_conf 238885899979778999799899997258013899989999988999----9999999999679982
Q 537021.9.peg.4 856 NCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQ----LSIYEKILKDSYPNKS 919 (952)
Q Consensus 856 ~~~~~~~~i~G~IDri~~~~~~~~IiDyKT~~~~~~~~~~~~~~Y~~Q----L~~Y~~al~~~~p~~~ 919 (952)
....+..+.-|.+=.|+..+++.+.-|-+--.+.|-.-+++-+.|+.| |.--+..++.+||+..
T Consensus 26 RD~SEshy~pG~~v~V~t~E~~~~fc~I~IlsV~pi~fd~Lne~HA~QEnM~L~eLK~vI~eIYP~~~ 93 (103)
T d1te7a_ 26 RDESESHFKTGDVLRVGRFEDDGYFCTIEVTATSTVTLDTLTEKHAEQENMTLTELKKVIADIYPGQT 93 (103)
T ss_dssp ECGGGCCCCTTSEEEEEETTTEEEEEEEEEEEEEEECSTTTSTHHHHHTTSCHHHHHHHHHHHCSCCS
T ss_pred CCCHHCCCCCCCEEEEEECCCCCEEEEEEEEEEEEECHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC
T ss_conf 25122456899889989836898899999999856607775278886527987999999999789986
No 23
>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=20.07 E-value=8.4 Score=11.73 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=10.5
Q ss_pred CCCEEECHHHCCCCCCCEEEEC
Q ss_conf 8530300122145677779981
Q 537021.9.peg.4 570 NEVRIMTVHTAKGLESPVVFLV 591 (952)
Q Consensus 570 d~V~imTiH~SKGLEfpvV~i~ 591 (952)
..+.+...+...=++.+.|++.
T Consensus 119 ~~~~v~~~~~~~~~~~~~iiIa 140 (223)
T d1ebda1 119 NTVRVVNGDSAQTYTFKNAIIA 140 (223)
T ss_dssp TEEEEEETTEEEEEECSEEEEC
T ss_pred CCCCEECCCCCEEEECCCEEEE
T ss_conf 6430102566328951657997
Done!