RPSBLAST alignment for GI: peg_410 and conserved domain: TIGR00609

>gnl|CDD|161956 TIGR00609, recB, exodeoxyribonuclease V, beta subunit. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1087

 Score =  124 bits (313), Expect = 1e-28
 Identities = 135/573 (23%), Positives = 216/573 (37%), Gaps = 93/573 (16%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD---VSAWIR--YKIDQEINHIL 181
           LTL K +    ++ KK+   + F+DL+      LK  +   ++  IR  Y I       L
Sbjct: 248 LTLLKEVQEELKKEKKRRREIGFDDLLSRLETALKSAEGEKLAQAIREQYPI------AL 301

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           IDE QDT   Q+ +   L               +LF +GD KQ+IYSF GA+    L+ K
Sbjct: 302 IDEFQDTDPQQYRIFSKLF--------IAQKTTSLFLIGDPKQAIYSFRGADIFTYLQAK 353

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                R T          L  ++RST  ++  ++K+FS+  N           + H+ + 
Sbjct: 354 SKADARYT----------LGTNWRSTPALVGSLNKLFSLISNPFLEKPIFIPVLAHQKNS 403

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS-NMIGTD 360
            G             Q        +       D   +++ A   AR IA  ++   +G  
Sbjct: 404 KG-----SFVINGQEQPPIHFFTTEVESEGVDDY--RQTIAQKCAREIALWLASAALGLA 456

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
              +    R ++A DI VLVR RK+   I      LK     SV  +D+  +      ++
Sbjct: 457 NFIATFGGRPLRAGDIAVLVRGRKEANQIRKA---LKKAQIPSVYLSDKSSVFATEEAQE 513

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
           L+AL   +L  E++ +    L S +F  S  ++  +       E V E  +++ +     
Sbjct: 514 LLALLEALLEPENEGTLRAALASSIFGLSALELETLNQDEITWERVVEKFREYHD----- 568

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-------VIDVLDEFL 533
                        I        F  L+L    G +      G         + ++L E  
Sbjct: 569 ---------IWRKIGVLAM---FQRLMLEKGIGERLLSQPGGERILTNLLHLAELLQEAA 616

Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
           +   RN+ +    L++ IS  E+    I R  S     V+I+T+H +KGLE P+VFL   
Sbjct: 617 HQ-ERNKLSLLRWLEDQISNEEEEEEEIIRLESDAEL-VKIVTIHKSKGLEYPIVFL--- 671

Query: 594 GSQVFSHKHIKKMHIMPSLND--DPGIPIWIPQSKSRNNIV--SDLIKHLKKSTQE---E 646
                           P + D           Q      +   +   ++ K +  E   E
Sbjct: 672 ----------------PFITDAKKSNFASLHDQHSHEYQLYDFNQSEENQKLARVERLAE 715

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
             RLLYV +TRA  QL I   +     K SN  
Sbjct: 716 DLRLLYVALTRAKKQLFIGI-APLITSKLSNLA 747