RPSBLAST alignment for GI: peg_410 and conserved domain: TIGR02785

>gnl|CDD|163019 TIGR02785, addA_Gpos, recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. Length = 1232
 Score =  137 bits (347), Expect = 1e-32
 Identities = 157/713 (22%), Positives = 272/713 (38%), Gaps = 106/713 (14%)

Query: 13  YELIYKDLWPLPYFQVSDINKYVSLSMETGNP-----TILKKAQTLQQASQTQCIEERFS 67
            + I   L          + K + L M              + Q + +  Q    +  ++
Sbjct: 208 QQQIKDLLKNELEGLQEKLQKALELFMAEDGLAPKLENFQLELQNIGELIQESLAQADWN 267

Query: 68  LLSSFFLTQKFTPQKNIIT----QEINKKSPDLKEKLKK-----SQDEFIK----IRDRF 114
            L       KF   K         ++ +++  L+E+ KK       D F +         
Sbjct: 268 ELREAVALFKFENLKAAKNAEEKADLKEEADKLREEAKKQIAKLKTDYFARDEEDYLRIM 327

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFED-----LIINTNDLLKKRDVSAWI 169
              K     LA L         +   K++  VLDF D     L I +N+     + + + 
Sbjct: 328 QELKPIVKALAQLVKD--FIEAFGAEKREKNVLDFSDLEHYALQILSNENESPSEAAEFY 385

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
           R K  +    +L+DE QDT+L+Q E I  L       K        LF VGD KQSIY F
Sbjct: 386 REKFKE----VLVDEYQDTNLLQ-ESILQLL------KRGEEDEGNLFMVGDVKQSIYRF 434

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSI-IELPLSFRSTADILTVVDKVFS--IPENAQG 286
             A+P   L EK     R    G +    I+L  +FRS  ++L   + +F   + E    
Sbjct: 435 RQADPSLFL-EK---YHRFAQEGNEHGKRIDLAENFRSRKEVLDTTNYLFKQLMDEEVGE 490

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
           +  D    ++  +++  +    +    +  +   +   ++E           +  A+++A
Sbjct: 491 IDYDEEAQLKFGNAKYPENPDNKTELLLYEKLAIEEEEEEEIDEEEEILDKAQQEATMVA 550

Query: 347 RRIAYTISNMIGTDTIF-----SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
            RI   I         F       G+ R +  +DI++L R R        +  F K    
Sbjct: 551 ERIKALI------KEGFKVYDKKTGEYRPVTYRDIVILTRSRGWNL--QIMEEFKKYG-- 600

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
           I V  ND         ++ +++L R I +   D+  V +L+SP+  F E+++  I  Q  
Sbjct: 601 IPVFVNDAENYFQTTEVRVMLSLLRVIDNPYQDIPLVAVLRSPIVGFDEEELALIRLQNK 660

Query: 462 ETETVYEYIQKFANCGISK----FQHVIKYIHELIHIAQFCSPHDFFTLI---------- 507
           ++ + YE ++ +           ++ +  ++  L    +F   H    LI          
Sbjct: 661 DS-SFYEAVKSYVKAQKLIEDELYEKLKNFLDSLQKWREFARTHSISELIWKIYNDTGYY 719

Query: 508 -----LGAKKGRQQFI-------SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE 555
                L   K RQ  +        ++       L +F+ F  R        +QE   +L 
Sbjct: 720 DYVGGLPNGKQRQANLYALYERARQYEKTSFKGLFQFIRFIER--------MQERQKDLA 771

Query: 556 QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                   A     N VR+MT+H +KGLE PVVF++  G Q F+ + +   ++   LN  
Sbjct: 772 S-----AVAVGEAENAVRLMTIHKSKGLEFPVVFVLGMGKQ-FNKQDLNSSYL---LNRQ 822

Query: 616 PGIPIWIPQSKSR---NNIVSDLIKH-LKKSTQEEYNRLLYVGMTRASDQLII 664
            G+ I     + R    ++    IK  +K+    E  R+LYV +TRA ++LI+
Sbjct: 823 LGLGITYIDPQERLSYPSLPKVAIKQKMKRELLSEEMRVLYVALTRAKEKLIL 875