RPSBLAST alignment for GI: peg_410 and conserved domain: COG1074
>gnl|CDD|31272 COG1074, RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]. Length = 1139
Score = 369 bits (949), Expect = e-102
Identities = 200/906 (22%), Positives = 344/906 (37%), Gaps = 82/906 (9%)
Query: 68 LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
L FF + K P L + ++ ++ + + ++ A L
Sbjct: 279 LEKIFFQKKLKKKTKEAKLLAR----PPLHAEFEEIENRILLADELL---RLAPRLRALL 331
Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
L + L Y+ K++ LDF+DLI LL + + ++ HILIDE QD
Sbjct: 332 KLLEELIERYDAEKRQRNALDFDDLIHRLAKLLTSEG--EELAESLREQYPHILIDEFQD 389
Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
T QW ++ L F G RTLF VGD KQSIY F GA+ L +
Sbjct: 390 TDPQQWRILSRLFAGFKAGN------RTLFLVGDPKQSIYRFRGADIFTFLEAASSEKA- 442
Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
F+ I L ++RST ++L V+ +F A D + +R G G+
Sbjct: 443 -------FARITLETNYRSTPELLNAVNALFKQAMFAYPGEIDYDP-VAELGARNGSPGS 494
Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
V + +++ WT+ + + A + AR+IA + +I + + +
Sbjct: 495 VNGEPLPALK----FWEEEDDWTAPENEEDEREIADLEARQIAAWLRELIEGEAVLDGER 550
Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
I+A DI VLVR R + I R LK I V ++R L + L +DL+AL R
Sbjct: 551 P--IRAGDIAVLVRSRNEAAAIE---RALKKAGIIPVYLSNRSSLFETLEAQDLLALLRA 605
Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
IL+ EDDL +L+SPLF +EDD+ + E E ++E +++ A+ I +F+ V+
Sbjct: 606 ILNPEDDLPLAALLRSPLFGLTEDDLAALAQDEAEWEFLWENLRQLAD--IWRFRGVLAM 663
Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
L A+ HD L + ++ + G ++L E L L E L
Sbjct: 664 WRAL---AKITPLHDLIAERLLSTNLGERDL-TNGLHAQELLQELLTRALSYEHGLLRWL 719
Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
+ I+ +E R ++ + VRIMT+H +KGLE P+VFL S+ F+ + +
Sbjct: 720 ERFIALIENNDEEQARRLESDRDLVRIMTIHKSKGLEFPIVFLPFILSKRFNDSDVPLLV 779
Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC-- 665
D ++ + ++ E RLLYV +TRA +QLI+
Sbjct: 780 YY----DGLRFELFDDLKSYPTPESQANKELAEEEALAEELRLLYVALTRAKEQLILIGA 835
Query: 666 ----KHSNTSNEKKSNQR-------TWYDMVYDSFHNDERVKKIK--------LTNSINK 706
+ S+ QR W ++ + + V + + +
Sbjct: 836 PSKREKSSALAPLDLGQRVQVGGTQDWEGLLAIALKLSDPVLEEEALGAKESPQPPRADL 895
Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
EW P + D ++ P + + +
Sbjct: 896 LEWARVFRRLKEPLWRVTSFSSLQQGEQDAYPRLDARQEASVKELPRPLSESGTPHEFPK 955
Query: 767 KTNLESLLSD---NQTFN-------RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLW 816
+ +LL N F+ G IH+LLQ + + ++ +
Sbjct: 956 GKSFGTLLHSVLENLDFSAPVDAAEIGTAIHELLQHLPFEEDWEQ-ELAEWLEAMLSTPL 1014
Query: 817 PAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQ 876
E +L I +P + +S S+ ++ + ++ G ID + +
Sbjct: 1015 EDAERAIILSQILAFFRDPELEFLFPINS-RPFSLLDPLSAGSERGLLQGIIDLLFRHEG 1073
Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIA------QLSIYEKILKDSYPNKSLVCLLIYVSEP 930
+I +YKT+ + P + QL +Y + L + L
Sbjct: 1074 RYYILDYKTNRLGDDSAAYSPAEAMLKQRYDLQLQLYAEALHRILRKRVKDYALARHFGG 1133
Query: 931 KVFIIP 936
+++
Sbjct: 1134 VLYLFL 1139