RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= 537021.9.peg.410_1
         (952 letters)



>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase,
            hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli}
            SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
          Length = 1180

 Score =  163 bits (412), Expect = 2e-40
 Identities = 129/873 (14%), Positives = 278/873 (31%), Gaps = 114/873 (13%)

Query: 96   LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
             K   +  +    +  D+     +    L        +       K++   L F+D++  
Sbjct: 298  TKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSR 357

Query: 156  TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
             +    + +    +   I       +IDE QDT   Q+ + R +          H     
Sbjct: 358  LDSA-LRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH--------HQPETA 408

Query: 216  LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
            L  +GD KQ+IY+F GA+    ++ +                  L  ++RS   ++  V+
Sbjct: 409  LLLIGDPKQAIYAFRGADIFTYMKARSEVHAH----------YTLDTNWRSAPGMVNSVN 458

Query: 276  KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            K+FS  ++A    E     ++               + +      +  P  + W    +S
Sbjct: 459  KLFSQTDDAFMFREIPFIPVKSAGK----------NQALRFVFKGETQPAMKMWLMEGES 508

Query: 336  LPQESSASILARRIAYTISNMI-----GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
                   S +A+  A  I + +     G   + +    R ++A DI VLVR R++   + 
Sbjct: 509  CGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVR 568

Query: 391  FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
                 L+      V  ++R  + + L  ++++ L + +++ E + +    L + +   + 
Sbjct: 569  DALTLLEIPS---VYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNA 625

Query: 451  DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
             DI  +    H  + V E    +          + +    +  +    S  +    +L  
Sbjct: 626  LDIETLNNDEHAWDVVVEEFDGYRQ--------IWRKRGVMPMLRALMSARNIAENLLAT 677

Query: 511  KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN 570
              G ++         I  L +     L +E      L + I E +    + +    ++ +
Sbjct: 678  AGGERRLTDI---LHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKH 734

Query: 571  EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
             V+I+T+H +KGLE P+V+L    +     +           +D       +       N
Sbjct: 735  LVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAF--------YHDRHSFEAVLD-----LN 781

Query: 631  IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII--CKHSNTSNEKKSNQRTWYDMVYDS 688
               + +   +     E  RLLYV +TR+     +          +KK +       +   
Sbjct: 782  AAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRL 841

Query: 689  FHNDERVKKIKLTNSINKDEWIAYEWSTHH-PENTPLEREETIKQLMDEQKIPKKLFSPI 747
                E      L   I         W T    +N P +  +     ++ + + +      
Sbjct: 842  LQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNW 901

Query: 748  K-----------NDINEPYILNPSTIDTKGKTNLESLLSDNQTF----NRGLIIHKLLQV 792
            +           + I +  +           + +E        F    + G  +H L + 
Sbjct: 902  RVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFED 961

Query: 793  I-FTLPEHKR-----------------------KNFITSYCTKNAKLWPAKEYKNLLLSI 828
            + FT P                              + +   +          +N  + +
Sbjct: 962  LDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEM 1021

Query: 829  TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD-----IIISGRIDQISISQQNIFIFEY 883
               L       A   D+           CP  +      ++ G ID +   +   ++ +Y
Sbjct: 1022 EFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDY 1081

Query: 884  KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYP 916
            K+ + + ++     YT  A   +   +    Y 
Sbjct: 1082 KS-NWLGEDSSA--YTQQA---MAAAMQAHRYD 1108


>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP-
           binding, DNA-binding; 2.50A {Geobacillus
           stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB:
           1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C*
           2pjr_B*
          Length = 724

 Score =  146 bits (369), Expect = 2e-35
 Identities = 125/601 (20%), Positives = 228/601 (37%), Gaps = 119/601 (19%)

Query: 81  QKNIITQEINKKSPDLKE-KLKKSQDEFIKIRDRFNTYKMFKSTLASLT--LAKYLNAHY 137
           Q +++   + +K+ D K+ + +         ++     + F    ++    +   +   Y
Sbjct: 121 QLSVMKTILKEKNIDPKKFEPRTILGTISAAKNELLPPEQFAKRASTYYEKVVSDVYQEY 180

Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
           ++   +N  LDF+DLI+ T  L  +      + +    +  +I IDE QDT+  Q+ +++
Sbjct: 181 QQRLLRNHSLDFDDLIMTTIQLFDRVP---DVLHYYQYKFQYIHIDEYQDTNRAQYTLVK 237

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L E F          + + AVGD  QSIY + GA+ + +L  +R              +
Sbjct: 238 KLAERF----------QNICAVGDADQSIYRWRGADIQNILSFER--------DYPNAKV 279

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
           I L  ++RST  IL   ++V                 I H  +R  +    +  E     
Sbjct: 280 ILLEQNYRSTKRILQAANEV-----------------IEHNVNRKPKRIWTENPEGKPIL 322

Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDIL 377
           +    N   E                  A+ +A  I   +         ++   + +D  
Sbjct: 323 YYEAMNEADE------------------AQFVAGRIREAV---------ERGERRYRDFA 355

Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
           VL R    + ++      LK +    +VG  +F   D   IKD++A  R I + +DDLS 
Sbjct: 356 VLYRTNAQSRVME--EMLLKANIPYQIVGGLKFY--DRKEIKDILAYLRVIANPDDDLSL 411

Query: 438 VCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQKFANCGIS-----KFQHVIKYIHEL 491
           + ++  P        I K+         +++E + +    G+              + + 
Sbjct: 412 LRIINVPKRGIGASTIDKLVRYAADHELSLFEALGELEMIGLGAKAAGALAAFRSQLEQW 471

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISR---FGNEVIDVLDEFLNFTLRNEQ-NSYSSL 547
             + ++ S  +    +L     R+   +         ++ LDEFL+ T   E  +   SL
Sbjct: 472 TQLQEYVSVTELVEEVLDKSGYREMLKAERTIEAQSRLENLDEFLSVTKHFENVSDDKSL 531

Query: 548 QELISELEQYPPTIKRA---HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
              +++L       +      +A  + V +MT+H AKGLE PVVFL+     +F H    
Sbjct: 532 IAFLTDLALISDLDELDGTEQAAEGDAVMLMTLHAAKGLEFPVVFLIGMEEGIFPHNR-- 589

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                 SL DD  +                          EE  RL YVG+TRA ++L++
Sbjct: 590 ------SLEDDDEM--------------------------EEERRLAYVGITRAEEELVL 617

Query: 665 C 665
            
Sbjct: 618 T 618


>2is6_A DNA helicase II; hydrolase/DNA complex; HET: DNA ADP; 2.20A
           {Escherichia coli} PDB: 2is2_A* 2is1_A* 2is4_A*
          Length = 680

 Score =  135 bits (341), Expect = 4e-32
 Identities = 111/601 (18%), Positives = 210/601 (34%), Gaps = 122/601 (20%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL--TLAKYLNAHYE 138
           Q  ++ + I   + D K+   +    +I  +           +  +      + +   Y+
Sbjct: 119 QLRLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQSYGNPVEQTWQKVYQAYQ 178

Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
           EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ IQ+  IR 
Sbjct: 179 EACDRAGLVDFAELLLRAHELWLNKP---HILQHYRERFTNILVDEFQDTNNIQYAWIR- 234

Query: 199 LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
                            +  VGD+ QSIY + GA+          N +R  N       I
Sbjct: 235 ---------LLAGDTGKVMIVGDDDQSIYGWRGAQV--------ENIQRFLNDFPGAETI 277

Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
            L  ++RST++IL+  + +                 I + + R+G+    +LW       
Sbjct: 278 RLEQNYRSTSNILSAANAL-----------------IENNNGRLGK----KLWTD----- 311

Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
               + +  S    F+ L +       AR +   I                     +  +
Sbjct: 312 --GADGEPISLYCAFNELDE-------ARFVVNRIKTWQ----------DNGGALAECAI 352

Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
           L R    + ++      L+      + G  RF   +   IKD ++  R I+++ DD +F 
Sbjct: 353 LYRSNAQSRVLE--EALLQASMPYRIYGGMRFF--ERQEIKDALSYLRLIVNRNDDAAFE 408

Query: 439 CMLKSPLFNFSEDDIFKICTQRHETETVYEY----------IQKFANCGISKFQHVIKYI 488
            ++ +P     +  +  +     + +               +   A   + +F  +I  +
Sbjct: 409 RVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQRFMELIDAL 468

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN----FTLRNEQNSY 544
            +           D      G +   +Q     G   I+ L+E +     F+   E    
Sbjct: 469 AQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFSYNEEDEDL 528

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
             LQ  +S         +       + V++MT+H+AKGLE P VF+V     +F  +   
Sbjct: 529 MPLQAFLSHAALE--AGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQM-- 584

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                 SL++   +                          EE  RL YVG+TRA  +L +
Sbjct: 585 ------SLDEGGRL--------------------------EEERRLAYVGVTRAMQKLTL 612

Query: 665 C 665
            
Sbjct: 613 T 613


>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex
           (helicase/DNA), DNA unwinding, hydrolase/DNA complex;
           HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19
           c.37.1.19
          Length = 673

 Score =  112 bits (280), Expect = 4e-25
 Identities = 96/598 (16%), Positives = 182/598 (30%), Gaps = 121/598 (20%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K +    I      L++ +    +    ++               +    Y    Y+   
Sbjct: 118 KELTEGLIEDDKVLLQQLISTISNWKNDLKTPSQAAASAIGERDRIFAHCY--GLYDAHL 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           K   VLDF+DLI+    LL+  +    +R +   +I ++L+DE QDT+  Q+        
Sbjct: 176 KACNVLDFDDLILLPTLLLQANE---EVRKRWQNKIRYLLVDEYQDTNTSQY-------- 224

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
              + K    S      VGD+ QSIYS+ GA P         N    +       +I+L 
Sbjct: 225 --ELVKLLVGSRARFTVVGDDDQSIYSWRGARP--------QNLVLLSQDFPALKVIKLE 274

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RS+  IL   + +                 I +      +    +L      +  S 
Sbjct: 275 QNYRSSGRILKAANIL-----------------IANNPHVFEKRLFSELGYGAELKVLSA 317

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
            N + E+     +                           + ++      Q KD  +L R
Sbjct: 318 NNEEHEAERVTGE---------------------------LIAHHFVNKTQYKDYAILYR 350

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + +       ++N     + G   F       IKDL+A  R + + +DD +F+ ++
Sbjct: 351 GNHQSRVFE--KFLMQNRIPYKISGGTSFF--SRPEIKDLLAYLRVLTNPDDDSAFLRIV 406

Query: 442 KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
            +P        + K+                      +      + +    H        
Sbjct: 407 NTPKREIGPATLKKLGEWAMTRNKSMFTASFDMGLSQTLSGRGYEALTRFTHWLAEIQRL 466

Query: 502 DFFTLI---------------LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
                I               L       +        V  +          +E +   +
Sbjct: 467 AEREPIAAVRDLIHGMDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGSELDEPMT 526

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           L ++++         +       ++V++MT+H +KGLE P V++V        H+     
Sbjct: 527 LTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLPHQ----- 581

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                           + +   +E  RL YVG+TRA  +L  
Sbjct: 582 ------------------------------SSIDEDNIDEERRLAYVGITRAQKELTF 609


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 76.5 bits (188), Expect = 2e-14
 Identities = 106/706 (15%), Positives = 193/706 (27%), Gaps = 303/706 (42%)

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
           LS  S   +    +    + + QL EQ          P +       D  P  + A ++ 
Sbjct: 11  LSHGSLEHVLLVPTASFFIAS-QLQEQFNKILPE---PTEGFA---ADDEP-TTPAELVG 62

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK-NDYKI-SV 404
           + + Y          +  +      Q   +L L        L  F   +L+ ND  I ++
Sbjct: 63  KFLGYVS------SLVEPSKVG---QFDQVLNLC-------LTEFENCYLEGND--IHAL 104

Query: 405 VG-----NDRFILTDHLAIKD----LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
                  ND  ++     IK+     +   R    + +         S LF    +   +
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN---------SALFRAVGEGNAQ 155

Query: 456 I--------CTQRHETE-----TVY-----EYIQKFANC--GISK--------FQH---V 484
           +         T  +  E       Y     + I+  A     + +        F     +
Sbjct: 156 LVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215

Query: 485 IKYIHE---------------------LIHIAQFC--------SPHDFFTLILGAKKGRQ 515
           ++++                       +I +A +         +P +  + + GA  G  
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT-GHS 274

Query: 516 Q------FIS------RFGNEVIDVLDEFLNFT-LRNEQNSY--SSLQELISELEQYPPT 560
           Q       I+       F   V   +   L F  +R    +Y  +SL          PP+
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKAI-TVLFFIGVRC-YEAYPNTSL----------PPS 322

Query: 561 IKRAHSANHNE--------VRIMTVHTAKGLESPVV--FLVDTGSQVFSHKHIKKMHIMP 610
           I    S  +NE        +          L    V  ++  T S + + K +    I  
Sbjct: 323 I-LEDSLENNEGVPSPMLSIS--------NLTQEQVQDYVNKTNSHLPAGKQV---EI-- 368

Query: 611 SLNDDPGIPIWIPQSKSRNNIVS-------DLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
           SL +             +N +VS        L   L+K                  DQ  
Sbjct: 369 SLVNGA-----------KNLVVSGPPQSLYGLNLTLRK-----------AKAPSGLDQSR 406

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS---INKDEWIAYEWSTHHPE 720
           I   S         +R                 K+K +N    +          ++  P 
Sbjct: 407 I-PFS---------ER-----------------KLKFSNRFLPV----------AS--PF 427

Query: 721 NTP-LER-EETIKQLMDEQKI---PKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
           ++  L    + I + + +  +    K +  P+       Y       DT   ++L  L S
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKDIQIPV-------Y-------DTFDGSDLRVL-S 472

Query: 776 DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLE-N 834
            +       I  +++  I  LP                  W            T +L+  
Sbjct: 473 GS-------ISERIVDCIIRLPVK----------------WE----TTTQFKATHILDFG 505

Query: 835 PMMTTAMSCDSYSEVSVSG-----KINCPKKD-----IIISGRIDQ 870
           P                SG       N   KD     +I++G +D 
Sbjct: 506 PG-------------GASGLGVLTHRN---KDGTGVRVIVAGTLDI 535



 Score = 65.0 bits (158), Expect = 7e-11
 Identities = 97/611 (15%), Positives = 169/611 (27%), Gaps = 265/611 (43%)

Query: 1   LKNRFGLSLNESYELIYKDLWPLPYFQVSDIN---KYVSLSMETGNPTILKKAQTLQQAS 57
           L+ +F   L E  E    D  P      +      K++          +    +  +   
Sbjct: 33  LQEQFNKILPEPTEGFAADDEP-----TTPAELVGKFLGY--------VSSLVEPSKVGQ 79

Query: 58  QTQC-------IEERF-------SLLSSFFLTQKFTP--QKNII----------TQEINK 91
             Q         E  +       +L +        T    K +I           +  +K
Sbjct: 80  FDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDK 139

Query: 92  KSPD-LKEKLKKSQDEFIKI-----------------RDRFNTYKMFKSTL---ASLTLA 130
           KS   L    +   +   ++                 RD + TY +    L   ++ TL+
Sbjct: 140 KSNSAL---FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLS 196

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ-EINHI--------L 181
           + L     +A+K           + T  L    ++  W+    +  + +++        L
Sbjct: 197 E-LIRTTLDAEK-----------VFTQGL----NILEWLENPSNTPDKDYLLSIPISCPL 240

Query: 182 IDEVQDTSLIQWEV-----------IRSL----T------------------EDFFVGKN 208
           I  +Q   L  + V           +RS     T                  E FF   +
Sbjct: 241 IGVIQ---LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFF--VS 295

Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
              +   LF +G      Y      P   L                 SI+E         
Sbjct: 296 VRKAITVLFFIGVRCYEAY------PNTSLPP---------------SILE--------- 325

Query: 269 DILTVVDKVFSIPENAQG-----LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
           D         S+ EN +G     LS      I + +            EQV    + + N
Sbjct: 326 D---------SL-ENNEGVPSPMLS------ISNLTQ-----------EQVQDYVN-KTN 357

Query: 324 PQQESWTSYFDSLPQESSASI-L--ARRIAYTISNMIGTDTIFS----NGKKRVIQAKDI 376
                  S+   LP      I L    +      N++ +    S    N   R  +A   
Sbjct: 358 -------SH---LPAGKQVEISLVNGAK------NLVVSGPPQSLYGLNLTLRKAKAPSG 401

Query: 377 L----VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA------IKDLMALGR 426
           L    +   +RK     +   RFL     ++      F  +  L        KDL     
Sbjct: 402 LDQSRIPFSERK--LKFS--NRFL----PVAS----PF-HSHLLVPASDLINKDL----- 443

Query: 427 FILSQEDDLSF-VCMLKSPLFN---------FSED---DIFK-ICTQR-H-ETETVYE-- 468
                ++++SF    ++ P+++          S      I   I       ET T ++  
Sbjct: 444 ----VKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKAT 499

Query: 469 YIQKFANCGIS 479
           +I  F   G S
Sbjct: 500 HILDFGPGGAS 510



 Score = 49.2 bits (117), Expect = 5e-06
 Identities = 84/474 (17%), Positives = 142/474 (29%), Gaps = 213/474 (44%)

Query: 10  NESY--EL-----IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQ-ASQTQC 61
            + Y  EL      Y  L       V D+              I   A+TL +    T  
Sbjct: 166 TDDYFEELRDLYQTYHVL-------VGDL--------------IKFSAETLSELIRTTLD 204

Query: 62  IEERFS--------------------LLS---SF---FLTQ--KFTPQKNIITQEINKKS 93
            E+ F+                    LLS   S     + Q   +     ++T ++   +
Sbjct: 205 AEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHY-----VVTAKLLGFT 259

Query: 94  P-DLKEKLK----KSQD----EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144
           P +L+  LK     SQ       I   D   +++ F                +   +K  
Sbjct: 260 PGELRSYLKGATGHSQGLVTAVAIAETD---SWESF----------------FVSVRKAI 300

Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE--VQDTSLIQWE-------V 195
            VL F                  +I  +  +   +  +    ++D SL   E        
Sbjct: 301 TVL-F------------------FIGVRCYEAYPNTSLPPSILED-SLENNEGVPSPMLS 340

Query: 196 IRSLTEDF---FVGK-NTH------------SSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           I +LT++    +V K N+H            +  +    V    QS+Y  +       LR
Sbjct: 341 ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN-LVVSGPPQSLYGLN-----LTLR 394

Query: 240 EKR----INQKRATNAGQK--FSIIELPLS--FRS------TADILTVV---DKVFS--- 279
           + +    ++Q R   + +K  FS   LP++  F S      +  I   +   +  F+   
Sbjct: 395 KAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD 454

Query: 280 --IP-------ENAQGLSEDSTTTIRHRSSRIGQVGT--VQLWEQVV---SQH--DSQCN 323
             IP        + + LS   +  I      +  +    V+ WE      + H  D    
Sbjct: 455 IQIPVYDTFDGSDLRVLSGSISERI------VDCIIRLPVK-WETTTQFKATHILD---- 503

Query: 324 PQQESWTSYFDSLPQESSA-SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
                    F   P  +S   +L  R      N  GT         RVI A  +
Sbjct: 504 ---------FG--PGGASGLGVLTHR------NKDGTGV-------RVIVAGTL 533


>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase,
           hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli}
           SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
          Length = 608

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 15/119 (12%), Positives = 32/119 (26%), Gaps = 46/119 (38%)

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
            +   +  +    +++ +    H     MTVH ++G E     L+               
Sbjct: 508 TRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALI--------------- 552

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                          +P  ++                      L+Y  +TRA  +L + 
Sbjct: 553 ---------------LPSQRTP----------------VVTRELVYTAVTRARRRLSLY 580


>1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase,
           hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli}
           SCOP: c.37.1.19 c.37.1.19 c.52.1.25 PDB: 3k70_C*
          Length = 1122

 Score = 45.6 bits (107), Expect = 5e-05
 Identities = 45/365 (12%), Positives = 99/365 (27%), Gaps = 79/365 (21%)

Query: 367 KKRVIQAKDILVLVRKRKD-TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
           +   +  +DI+V+V      +P I  +      D  +    +DR     H  ++  ++L 
Sbjct: 399 EDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLL 458

Query: 426 RFILSQEDDLSFVCMLKSPL----FNFSEDDIFKI------------------------- 456
               S+      + +L  P+    F+ +E+ +  +                         
Sbjct: 459 SLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPA 518

Query: 457 --------CTQRHETETVYEYIQKFANCGISKFQHVIKYIHELI-HIAQFCSPHDFFTLI 507
                      R       E  Q      +  +      I EL+ H+A      + +   
Sbjct: 519 TGQHTWRFGLTRMLLGYAMESAQGEWQ-SVLPYDESSGLIAELVGHLASLLMQLNIWRRG 577

Query: 508 LGAKKGRQQFISRFGN-----------------EVIDVLDEFLNFTLRNEQNSYSSLQEL 550
           L  ++  ++++    +                  +       +   L  +      L  L
Sbjct: 578 LAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLL 637

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
             EL Q     + +       V I T+   + +   VV L+     V+  +       + 
Sbjct: 638 RDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLM 697

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
           S     G                        S +++   L    +  A  +L I     +
Sbjct: 698 SQKPKRGDR----------------------SRRDDDRYLFLEALISAQQKLYISYIGRS 735

Query: 671 SNEKK 675
             +  
Sbjct: 736 IQDNS 740



 Score = 29.4 bits (65), Expect = 3.9
 Identities = 12/128 (9%), Positives = 36/128 (28%), Gaps = 4/128 (3%)

Query: 452 DIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH--DFFTLILG 509
           D   + +    ++ +  ++    +  +   Q  I  +                     L 
Sbjct: 309 DYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLD 368

Query: 510 AKKGRQQFISRFG--NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA 567
                  F        EV  + D  L     +   +   +  ++++++ Y P I+    +
Sbjct: 369 PLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGS 428

Query: 568 NHNEVRIM 575
              +  + 
Sbjct: 429 APADRYLP 436


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
            acid synthase, acyl-carrier-protein, beta-ketoacyl
            reductase, beta-ketoacyl synthase, dehydratase; 4.00A
            {Saccharomyces cerevisiae}
          Length = 1688

 Score = 33.6 bits (76), Expect = 0.20
 Identities = 32/155 (20%), Positives = 62/155 (40%), Gaps = 26/155 (16%)

Query: 157  NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
            N  LK R  + W+  K  + ++   +    +TS+++   IR +  + F G N        
Sbjct: 865  NGNLKGRPYTGWVDSKTKEPVDDKDVKAKYETSILEHSGIRLIEPELFNGYNPEKK---- 920

Query: 217  FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL---TV 273
                +  Q +      EP    +E    ++     G K  I E+P +   +  +L   T+
Sbjct: 921  ----EMIQEVIVEEDLEPFEASKETA--EQFKHQHGDKVDIFEIPETGEYSVKLLKGATL 974

Query: 274  -------VDKVFS--IPE--NAQ--GLSEDSTTTI 295
                    D++ +  IP   NA+  G+S+D  + +
Sbjct: 975  YIPKALRFDRLVAGQIPTGWNAKTYGISDDIISQV 1009



 Score = 28.6 bits (63), Expect = 5.9
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 23/75 (30%)

Query: 470  IQKFANCGISKFQHVIKYIHELIHIAQF--CSPHDFFTLILGAKKG-----RQQFISRFG 522
            ++ F   GI+    + KY    +H+++   CS         G+  G     R  F  RF 
Sbjct: 1021 VEAFIASGITDPYEMYKY----VHVSEVGNCS---------GSGMGGVSALRGMFKDRFK 1067

Query: 523  NEVI--DVLDE-FLN 534
            +E +  D+L E F+N
Sbjct: 1068 DEPVQNDILQESFIN 1082


>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD,
           hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A*
           2gk7_A
          Length = 624

 Score = 33.5 bits (75), Expect = 0.22
 Identities = 29/134 (21%), Positives = 43/134 (32%), Gaps = 45/134 (33%)

Query: 552 SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
           S L QY       H+  + EV I +V   +G E   + L    S V +++H      +  
Sbjct: 511 SYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIIL----SCVRANEH----QGIGF 562

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
           LND                                  R L V +TRA   +II  +    
Sbjct: 563 LNDP---------------------------------RRLNVALTRARYGVIIVGNPKAL 589

Query: 672 NEKKSNQRTWYDMV 685
               S Q  W  ++
Sbjct: 590 ----SKQPLWNHLL 599


>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1,
           structural genomics, PSI-2, midwest center for
           structural genomics; HET: MSE; 1.66A {Lactobacillus
           plantarum}
          Length = 174

 Score = 31.9 bits (71), Expect = 0.63
 Identities = 8/54 (14%), Positives = 21/54 (38%)

Query: 556 QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
           +    I+  +      V ++    AKGLE   V + +   + +  +  +++   
Sbjct: 86  EQVTLIQTENQRLAPGVIVVPSFLAKGLEFDAVIVWNANQENYQREDERQLLYT 139


>2wjy_A Regulator of nonsense transcripts 1; alternative splicing, nonsense
           mediated decay, zinc-finger, ATP-binding, polymorphism,
           metal-binding, UPF2; 2.50A {Homo sapiens} PDB: 2wjv_A
           2iyk_A
          Length = 800

 Score = 32.1 bits (72), Expect = 0.66
 Identities = 29/134 (21%), Positives = 43/134 (32%), Gaps = 45/134 (33%)

Query: 552 SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
           S L QY       H+  + EV I +V   +G E   + L    S V +++H      +  
Sbjct: 687 SYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIIL----SCVRANEH----QGIGF 738

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
           LND                                  R L V +TRA   +II  +    
Sbjct: 739 LNDP---------------------------------RRLNVALTRARYGVIIVGNPKAL 765

Query: 672 NEKKSNQRTWYDMV 685
               S Q  W  ++
Sbjct: 766 ----SKQPLWNHLL 775


>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit
           alpha isoform; PI3KCA, PI3K, PIK3R1,
           phosphatidilynositol 3,4,5- triphosphate, wortmannin,
           H1047R, ATP-binding, disease mutation, kinase; HET: KWT;
           2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 2enq_A
          Length = 1091

 Score = 30.7 bits (69), Expect = 1.7
 Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 7/121 (5%)

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
             + PL   +E +   + + RH   T+ E + K         +  +  ++ L+       
Sbjct: 558 STRDPLSEITEQEKDFLWSHRHYCVTIPEILPKLLLSVKWNSRDEVAQMYCLVKDWPPIK 617

Query: 500 PHDFFTLILGA---KKGRQQFISRFGNEVIDVLDEFLNF----TLRNEQNSYSSLQELIS 552
           P     L+         R   +      + D             L+ EQ   + L   + 
Sbjct: 618 PEQAMELLDCNYPDPMVRGFAVRCLEKYLTDDKLSQYLIQLVQVLKYEQYLDNLLVRFLL 677

Query: 553 E 553
           +
Sbjct: 678 K 678


>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping,
           actin-binding, calcium, cytoplasm, cytoskeleton,
           structural protein; 2.00A {Homo sapiens}
          Length = 398

 Score = 30.8 bits (69), Expect = 1.7
 Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 2/85 (2%)

Query: 516 QFISRFGNEVIDVLDEFLNF-TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRI 574
             ISR   +V+    E  NF      +  Y++ + L  E     P +    +     +  
Sbjct: 239 DTISRTEKQVVVEGQEPANFWMALGGKAPYANTKRLQEENLVITPRLFECSNKTGRFLAT 298

Query: 575 MTVHTAKG-LESPVVFLVDTGSQVF 598
                 +  LE   VFL+D   QVF
Sbjct: 299 EIPDFNQDDLEEDDVFLLDVWDQVF 323


>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein,
           ATP-binding, nucleotide-binding, hydrolase; 2.20A
           {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
          Length = 574

 Score = 30.6 bits (68), Expect = 1.7
 Identities = 6/17 (35%), Positives = 9/17 (52%)

Query: 649 RLLYVGMTRASDQLIIC 665
            L+Y  +TRA D+    
Sbjct: 522 NLVYTALTRARDRFFSA 538


>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A
           {Escherichia coli}
          Length = 505

 Score = 28.8 bits (64), Expect = 5.1
 Identities = 12/129 (9%), Positives = 34/129 (26%), Gaps = 6/129 (4%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIK-----IRDRFNTYKMFKSTLASLTLAKYLNA 135
            K  I ++IN K+P+   +      +  +      +   + +      +    +      
Sbjct: 164 AKAGIMEKINHKTPEEIYEALGFNKDESQRQEKAKQQAEDAWDRLPPNVRKFDVDVEQFH 223

Query: 136 HYEEAKKKNCVLDFE-DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
           +         VL      +       K +            E  +  +    +    Q +
Sbjct: 224 YLVVLDDYGNVLSVTRTGVRPYVGSEKAKAGIMDKVDHKTPEEIYEALGFNNEEPQRQNQ 283

Query: 195 VIRSLTEDF 203
             ++  + F
Sbjct: 284 AKKAAYDVF 292


>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP,
           CTP, phosphoethanolamine, SGC, structural genomics
           consortium; HET: C5P; 2.00A {Homo sapiens}
          Length = 341

 Score = 28.8 bits (64), Expect = 5.9
 Identities = 15/100 (15%), Positives = 35/100 (35%), Gaps = 18/100 (18%)

Query: 670 TSNEKKSNQRTWY-DMVYDSFHND-----ERVKKI----KLTNSINKDEWIAYEWSTHHP 719
           +  E +  +   Y    +D FH       E+V ++     +   ++ D+ + +    ++P
Sbjct: 190 SGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHFDQEVNHYKGKNYP 249

Query: 720 ENTPLEREETIKQL--------MDEQKIPKKLFSPIKNDI 751
                ER  ++                +  +L S  K D+
Sbjct: 250 IMNLHERTLSVLACRYVSEVVIGAPYAVTAELLSHFKVDL 289


>1zro_A Erythrocyte binding antigen region II; EBA-175, RII, DBL, invasion,
           HOST, malaria, disease, glycophorin, glycan, sialic
           acid; HET: SO4; 2.25A {Plasmodium falciparum} SCOP:
           a.264.1.1 a.264.1.1 PDB: 1zrl_A*
          Length = 602

 Score = 28.9 bits (64), Expect = 6.1
 Identities = 16/98 (16%), Positives = 35/98 (35%), Gaps = 14/98 (14%)

Query: 73  FLTQKFTPQKNIITQEINKKSPD---------LKEKLKKSQDEFIKIRDRFNTYK----- 118
           +   K    + +  +   K   D          KE + K ++E+ K   ++  Y+     
Sbjct: 493 YCQDKTKMIETLKVECKEKPCEDDNCKRKCNSYKEWISKKKEEYNKQAKQYQEYQKGNNY 552

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
              S   S+    YL  + E+    N   +F++ + + 
Sbjct: 553 KMYSEFKSIKPEVYLKKYSEKCSNLNFEDEFKEELHSD 590


>2a6h_C DNA-directed RNA polymerase beta chain; RNA polymerase holoenzyme,
           streptolydigin, antibiotic, transcription regulation;
           HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.1
           PDB: 1smy_C* 1zyr_C* 1iw7_C* 2a69_C* 2a6e_C 2a68_C*
           2be5_C* 2cw0_C 2o5i_C 2o5j_C* 2ppb_C* 3dxj_C* 3eql_C*
           1ynj_C* 1ynn_C* 2gho_C 1hqm_C 1l9u_C 1l9z_C 1i6v_C*
          Length = 1119

 Score = 28.2 bits (62), Expect = 8.8
 Identities = 24/180 (13%), Positives = 53/180 (29%), Gaps = 13/180 (7%)

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFL--KNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
           ++   ++ +   ++  PL+  L R L    +     +G    +      ++ LM    F 
Sbjct: 176 VEPNGVVSMKVNKRKFPLVLLL-RVLGYDQETLARELGAYGEL------VQGLMDESVFA 228

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
           +  E+ L  +  L  P      D               Y+  +     G  K +  +   
Sbjct: 229 MRPEEALIRLFTLLRPGDPPKRDKAVAYVYGLIADPRRYDLGEA----GRYKAEEKLGIR 284

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
                +A+F        + L   +      +      +D +D   N  +R      +   
Sbjct: 285 LSGRTLARFEDGEFKDEVFLPTLRYLFALTAGVPGHEVDDIDHLGNRRIRTVGELMTDQF 344


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.319    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0450    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 7,915,164
Number of extensions: 371036
Number of successful extensions: 1150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1126
Number of HSP's successfully gapped: 53
Length of query: 952
Length of database: 5,693,230
Length adjustment: 101
Effective length of query: 851
Effective length of database: 3,244,586
Effective search space: 2761142686
Effective search space used: 2761142686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.0 bits)