RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= 537021.9.peg.410_1 (952 letters) >d1w36b2 c.37.1.19 (B:486-880) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]} Length = 395 Score = 139 bits (350), Expect = 1e-33 Identities = 60/366 (16%), Positives = 130/366 (35%), Gaps = 33/366 (9%) Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMI-----GTDTIFSNGKKRVIQAKDILV 378 P + W +S S +A+ A I + + G + + R ++A DI V Sbjct: 12 PAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISV 71 Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438 LVR R++ + L SV ++R + + L ++++ L + +++ E + + Sbjct: 72 LVRSRQEAAQVR---DALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLR 128 Query: 439 CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC 498 L + + + DI ++ +++F + + + + + Sbjct: 129 SALATSMMGLNALDIET---LNNDEHAWDVVVEEFDGY-----RQIWRKRGVMPMLRALM 180 Query: 499 SPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558 S + +L G ++ I L + L +E L + I E + Sbjct: 181 SARNIAENLLATAGGERRLTDILH---ISELLQEAGTQLESEHALVRWLSQHILEPDSNA 237 Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618 + + ++ + V+I+T+H +KGLE P+V+L + + +D Sbjct: 238 SSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQ--------AFYHDRHSF 289 Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII-CKHSNTSNEKKSN 677 + N + + + E RLLYV +TR+ + K Sbjct: 290 EAVLD-----LNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKG 344 Query: 678 QRTWYD 683 + Sbjct: 345 DTDVHQ 350 >g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Length = 623 Score = 136 bits (343), Expect = 7e-33 Identities = 124/617 (20%), Positives = 214/617 (34%), Gaps = 130/617 (21%) Query: 53 LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112 L++ I FS+L T Q +++ + +K+ D K+ ++ I Sbjct: 100 LRRDIDRIGINRNFSILDP-------TDQLSVMKTILKEKNIDPKKFEPRTILGTISAAK 152 Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172 + + + Y++ +N LDF+DLI+ T L + + + Sbjct: 153 NELLPPEQFAKRYYEKVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVP---DVLHY 209 Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232 + +I IDE QDT+ Q+ +++ L E F + + AVGD QSIY + GA Sbjct: 210 YQYKFQYIHIDEYQDTNRAQYTLVKKLAERF----------QNICAVGDADQSIYRWRGA 259 Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292 + + +L +R I L ++RST IL ++V N + Sbjct: 260 DIQNILSFERDYPNAKV--------ILLEQNYRSTKRILQAANEVIEHNVNRKP------ 305 Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352 + WT + P + Sbjct: 306 ---------------------------------KRIWTENPEGKPIL-----YYEAMNEA 327 Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412 I ++ + +D VL R + ++ LK + +VG +F Sbjct: 328 DEAQFVAGRIREAVERGERRYRDFAVLYRTNAQSRVME--EMLLKANIPYQIVGGLKFY- 384 Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472 D IKD++A R I + +DDLS + ++ P I Sbjct: 385 -DRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTIDLFEALGELEMIGLGA--- 440 Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL---GAKKGRQQFISRFGNEVIDVL 529 + + + ++ S + +L G ++ + + ++ L Sbjct: 441 ---KAAGALAAFRSQLEQWTQLQEYVSVTELVEEVLDKSGYREMLKAERTIEAQSRLENL 497 Query: 530 DEFLNFTLRNEQNS-YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588 DEFL+ T E S SL +++L + V +MT+H AKGLE PVV Sbjct: 498 DEFLSVTKHFENVSDDKSLIAFLTDLALISG----------DAVMLMTLHAAKGLEFPVV 547 Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 FL+ +F H SL DD + EE Sbjct: 548 FLIGMEEGIFPHNR--------SLEDDDEM--------------------------EEER 573 Query: 649 RLLYVGMTRASDQLIIC 665 RL YVG+TRA ++L++ Sbjct: 574 RLAYVGITRAEEELVLT 590 >d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]} Length = 485 Score = 101 bits (251), Expect = 3e-22 Identities = 35/195 (17%), Positives = 69/195 (35%), Gaps = 19/195 (9%) Query: 90 NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149 K + + + D+ + L + K++ L F Sbjct: 292 RFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGF 351 Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209 +D++ + + + + I +IDE QDT Q+ + R + Sbjct: 352 DDMLSRLDSA-LRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH-------- 402 Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269 H L +GD KQ+IY+F GA+ ++ + L ++RS Sbjct: 403 HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH----------YTLDTNWRSAPG 452 Query: 270 ILTVVDKVFSIPENA 284 ++ V+K+FS ++A Sbjct: 453 MVNSVNKLFSQTDDA 467 >d1pjra2 c.37.1.19 (A:319-651) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Length = 333 Score = 78.6 bits (192), Expect = 2e-15 Identities = 66/333 (19%), Positives = 114/333 (34%), Gaps = 60/333 (18%) Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405 A+ +A I + ++ + +D VL R + ++ LK + I Sbjct: 15 AQFVAGRIREAV---------ERGERRYRDFAVLYRTNAQSRVME--EMLLKAN--IPYQ 61 Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465 D IKD++A R I + +DDLS + ++ P I K+ + E Sbjct: 62 IVGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTIDKLVRYAADHEL 121 Query: 466 VY------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519 + + + + ++ S + +L R+ + Sbjct: 122 SLFEALGELEMIGLGAKAAGALAAFRSQLEQWTQLQEYVSVTELVEEVLDKSGYREMLKA 181 Query: 520 RFGNEVIDVLDEFLNF----TLRNEQNSYSSLQELISELEQYPPTIKRA---HSANHNEV 572 E L+ F + SL +++L + +A + V Sbjct: 182 ERTIEAQSRLENLDEFLSVTKHFENVSDDKSLIAFLTDLALISDLDELDGTEQAAEGDAV 241 Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632 +MT+H AKGLE PVVFL+ +F H SL DD + Sbjct: 242 MLMTLHAAKGLEFPVVFLIGMEEGIFPHNR--------SLEDDDEM-------------- 279 Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 EE RL YVG+TRA ++L++ Sbjct: 280 ------------EEERRLAYVGITRAEEELVLT 300 >d1uaaa2 c.37.1.19 (A:308-640) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Length = 333 Score = 64.0 bits (154), Expect = 5e-11 Identities = 51/335 (15%), Positives = 103/335 (30%), Gaps = 63/335 (18%) Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405 A R+ + ++ Q KD +L R + + ++N I Sbjct: 17 AERVT---------GELIAHHFVNKTQYKDYAILYRGNHQSRVFE--KFLMQNR--IPYK 63 Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465 + IKDL+A R + + +DD +F+ ++ +P + K+ Sbjct: 64 ISGGTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKREIGPATLKKLGEWAMTRNK 123 Query: 466 VYEY----------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515 + +++F H + I L + D + + Sbjct: 124 SMFTASFDMGLSQTLSGRGYEALTRFTHWLAEIQRLAEREPIAAVRDLIHGMDYESWLYE 183 Query: 516 QFISRFGN-----EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN 570 S V + +E + +L ++++ + + Sbjct: 184 TSPSPKAAEMRMKNVNQLFSWMTEMLEGSELDEPMTLTQVVTRFTLRDMMERGESEEELD 243 Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630 +V++MT+H +KGLE P V++V H+ Sbjct: 244 QVQLMTLHASKGLEFPYVYMVGMEEGFLPHQ----------------------------- 274 Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665 + + +E RL YVG+TRA +L Sbjct: 275 ------SSIDEDNIDEERRLAYVGITRAQKELTFT 303 >d1w36c2 c.37.1.19 (C:348-817) Exodeoxyribonuclease V gamma chain (RecC), N-terminal domain {Escherichia coli [TaxId: 562]} Length = 470 Score = 62.0 bits (149), Expect = 2e-10 Identities = 40/349 (11%), Positives = 88/349 (25%), Gaps = 77/349 (22%) Query: 371 IQAKDILVLVRKRKD-TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429 + +DI+V+V +P I + D + +DR H ++ ++L Sbjct: 56 LTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPD 115 Query: 430 SQEDDLSFVCMLKSPL----FNFSEDDIFKI-------------CTQRHETETVYEYIQK 472 S+ + +L P+ F+ +E+ + + + Q Sbjct: 116 SRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQH 175 Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF----------- 521 G+++ + LI + + Sbjct: 176 TWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQER 235 Query: 522 --------------------------GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE 555 + + L + L L EL Sbjct: 236 PLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELA 295 Query: 556 QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615 Q + + V I T+ + + VV L+ V+ Sbjct: 296 QRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVY----------------- 338 Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664 + +++S K +S +++ L + A +L I Sbjct: 339 -----PRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYI 382 >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Length = 318 Score = 56.6 bits (135), Expect = 1e-08 Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 21/151 (13%) Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188 + + Y++ +N LDF+DLI+ T L + + + + +I IDE QDT Sbjct: 172 VVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVP---DVLHYYQYKFQYIHIDEYQDT 228 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 + Q+ +++ L + + AVGD QSIY + GA+ + +L +R Sbjct: 229 NRAQYTLVKKL----------AERFQNICAVGDADQSIYRWRGADIQNILSFERDYPNAK 278 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFS 279 I L ++RST IL ++V Sbjct: 279 V--------ILLEQNYRSTKRILQAANEVIE 301 >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Length = 306 Score = 47.4 bits (111), Expect = 5e-06 Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 21/151 (13%) Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188 + + Y+ K VLDF+DLI+ LL+ + +R + +I ++L+DE QDT Sbjct: 162 IFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQANE---EVRKRWQNKIRYLLVDEYQDT 218 Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248 + Q+ + K S VGD+ QSIYS+ GA P+ N Sbjct: 219 NTSQY----------ELVKLLVGSRARFTVVGDDDQSIYSWRGARPQ--------NLVLL 260 Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFS 279 + +I+L ++RS+ IL + + + Sbjct: 261 SQDFPALKVIKLEQNYRSSGRILKAANILIA 291 >d1w36d2 c.37.1.19 (D:361-606) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Length = 246 Score = 29.8 bits (66), Expect = 1.1 Identities = 6/17 (35%), Positives = 10/17 (58%) Query: 649 RLLYVGMTRASDQLIIC 665 L+Y +TRA +L + Sbjct: 204 ELVYTAVTRARRRLSLY 220 >d1zroa2 a.264.1.1 (A:283-596) Erythrocyte binding antigen region II {Plasmodium falciparum [TaxId: 5833]} Length = 314 Score = 28.5 bits (63), Expect = 2.3 Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 5/66 (7%) Query: 97 KEKLKKSQDEFIKIRDRFNTYK-----MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFED 151 KE + K ++E+ K ++ Y+ S S+ YL + E+ N +F++ Sbjct: 244 KEWISKKKEEYNKQAKQYQEYQKGNNYKMYSEFKSIKPEVYLKKYSEKCSNLNFEDEFKE 303 Query: 152 LIINTN 157 + + Sbjct: 304 ELHSDY 309 >d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III {Escherichia coli [TaxId: 562]} Length = 268 Score = 27.4 bits (59), Expect = 5.4 Identities = 21/168 (12%), Positives = 48/168 (28%), Gaps = 5/168 (2%) Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606 LQE + +P N + L V G + +++ Sbjct: 32 LQETKVHDDMFPLEEVAKLGYNVFYHGQKGHYGVALLTKETPIAVRRGFPGDDEEAQRRI 91 Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666 + + + + + + K + L + R + LI+ Sbjct: 92 IMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGD 151 Query: 667 HSNTSNE-----KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709 + + + + N++ W SF +ER +L + D + Sbjct: 152 MNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDRLMSWGLVDTF 199 >d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]} Length = 584 Score = 27.1 bits (59), Expect = 6.3 Identities = 22/196 (11%), Positives = 57/196 (29%), Gaps = 20/196 (10%) Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447 ++ L+R + + F+ L++K L L + ++ + Sbjct: 221 AVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETIL 280 Query: 448 FSEDDIFKICTQRHETET---VYEYIQKFANCGISKFQHV----------------IKYI 488 + K +H ++E I + V ++Y+ Sbjct: 281 NKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYL 340 Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548 L + S + + + + + L + + + N+ + Sbjct: 341 A-LESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVA 399 Query: 549 ELISELEQYPPTIKRA 564 E++S LE +I+ Sbjct: 400 EMLSYLETADYSIREE 415 >d1kqra_ b.29.1.14 (A:) vp4 sialic acid binding domain {Rhesus rotavirus [TaxId: 10969]} Length = 160 Score = 27.0 bits (60), Expect = 6.7 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 3/53 (5%) Query: 185 VQDTSLIQW---EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234 + + S QW +V+++ + S L+AV IY+++G P Sbjct: 66 IANASQTQWKFIDVVKTTQNGSYSQYGPLQSTPKLYAVMKHNGKIYTYNGETP 118 >d1igwa_ c.1.12.7 (A:) Isocitrate lyase {Escherichia coli [TaxId: 562]} Length = 416 Score = 26.9 bits (59), Expect = 6.8 Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 19/93 (20%) Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304 Q++ ++ G KF I L S F++ + A ++ Sbjct: 336 QQQLSDMGYKFQFITLA-GIHSMW---------FNMFDLANAYAQGEGMK--------HY 377 Query: 305 VGTVQLWEQVVSQHDSQC-NPQQESWTSYFDSL 336 V VQ E ++ + QQE T YFD + Sbjct: 378 VEKVQQPEFAAAKDGYTFVSHQQEVGTGYFDKV 410 >d2i9wa1 d.17.4.30 (A:46-158) Hypothetical protein Psyc2064 {Psychrobacter arcticus [TaxId: 334543]} Length = 113 Score = 26.8 bits (59), Expect = 8.0 Identities = 6/29 (20%), Positives = 8/29 (27%) Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQK 738 Y T P L + I+ E Sbjct: 23 PEYIVKTTLPAQQDLLDIKAIENWAKETD 51 >d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 158 Score = 26.7 bits (58), Expect = 9.8 Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 18/74 (24%) Query: 688 SFHNDERVKK-----------IKLTNSINKDEWIAYEWSTHH-------PENTPLEREET 729 S+ N+ R+ + IK+ N I ++ + E+ Sbjct: 85 SYLNNNRMIQGTKFLLQDGDEIKIIWDKNNKFVIGFKVEINDTTGLFNEGLGMLQEQRVV 144 Query: 730 IKQLMDEQKIPKKL 743 +KQ +E+ + KKL Sbjct: 145 LKQTAEEKDLVKKL 158 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.319 0.134 0.385 Gapped Lambda K H 0.267 0.0443 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 3,453,543 Number of extensions: 164517 Number of successful extensions: 485 Number of sequences better than 10.0: 1 Number of HSP's gapped: 471 Number of HSP's successfully gapped: 29 Length of query: 952 Length of database: 2,407,596 Length adjustment: 94 Effective length of query: 858 Effective length of database: 1,116,976 Effective search space: 958365408 Effective search space used: 958365408 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 57 (26.5 bits)