RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 537021.9.peg.410_1
         (952 letters)



>d1w36b2 c.37.1.19 (B:486-880) Exodeoxyribonuclease V beta chain
           (RecB), N-terminal domain {Escherichia coli [TaxId:
           562]}
          Length = 395

 Score =  139 bits (350), Expect = 1e-33
 Identities = 60/366 (16%), Positives = 130/366 (35%), Gaps = 33/366 (9%)

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMI-----GTDTIFSNGKKRVIQAKDILV 378
           P  + W    +S       S +A+  A  I + +     G   + +    R ++A DI V
Sbjct: 12  PAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISV 71

Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
           LVR R++   +      L      SV  ++R  + + L  ++++ L + +++ E + +  
Sbjct: 72  LVRSRQEAAQVR---DALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLR 128

Query: 439 CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC 498
             L + +   +  DI       ++       +++F        + + +    +  +    
Sbjct: 129 SALATSMMGLNALDIET---LNNDEHAWDVVVEEFDGY-----RQIWRKRGVMPMLRALM 180

Query: 499 SPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
           S  +    +L    G ++         I  L +     L +E      L + I E +   
Sbjct: 181 SARNIAENLLATAGGERRLTDILH---ISELLQEAGTQLESEHALVRWLSQHILEPDSNA 237

Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
            + +    ++ + V+I+T+H +KGLE P+V+L    +     +           +D    
Sbjct: 238 SSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQ--------AFYHDRHSF 289

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII-CKHSNTSNEKKSN 677
              +       N   + +   +     E  RLLYV +TR+     +           K  
Sbjct: 290 EAVLD-----LNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKG 344

Query: 678 QRTWYD 683
               + 
Sbjct: 345 DTDVHQ 350


>g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus
           stearothermophilus, PcrA [TaxId: 1422]}
          Length = 623

 Score =  136 bits (343), Expect = 7e-33
 Identities = 124/617 (20%), Positives = 214/617 (34%), Gaps = 130/617 (21%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L++      I   FS+L         T Q +++   + +K+ D K+   ++    I    
Sbjct: 100 LRRDIDRIGINRNFSILDP-------TDQLSVMKTILKEKNIDPKKFEPRTILGTISAAK 152

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
                    +      +   +   Y++   +N  LDF+DLI+ T  L  +      + + 
Sbjct: 153 NELLPPEQFAKRYYEKVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVP---DVLHY 209

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
              +  +I IDE QDT+  Q+ +++ L E F          + + AVGD  QSIY + GA
Sbjct: 210 YQYKFQYIHIDEYQDTNRAQYTLVKKLAERF----------QNICAVGDADQSIYRWRGA 259

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           + + +L  +R               I L  ++RST  IL   ++V     N +       
Sbjct: 260 DIQNILSFERDYPNAKV--------ILLEQNYRSTKRILQAANEVIEHNVNRKP------ 305

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                                            +  WT   +  P           +   
Sbjct: 306 ---------------------------------KRIWTENPEGKPIL-----YYEAMNEA 327

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
                    I    ++   + +D  VL R    + ++      LK +    +VG  +F  
Sbjct: 328 DEAQFVAGRIREAVERGERRYRDFAVLYRTNAQSRVME--EMLLKANIPYQIVGGLKFY- 384

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
            D   IKD++A  R I + +DDLS + ++  P        I                   
Sbjct: 385 -DRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTIDLFEALGELEMIGLGA--- 440

Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL---GAKKGRQQFISRFGNEVIDVL 529
                          + +   + ++ S  +    +L   G ++  +   +      ++ L
Sbjct: 441 ---KAAGALAAFRSQLEQWTQLQEYVSVTELVEEVLDKSGYREMLKAERTIEAQSRLENL 497

Query: 530 DEFLNFTLRNEQNS-YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
           DEFL+ T   E  S   SL   +++L               + V +MT+H AKGLE PVV
Sbjct: 498 DEFLSVTKHFENVSDDKSLIAFLTDLALISG----------DAVMLMTLHAAKGLEFPVV 547

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           FL+     +F H          SL DD  +                          EE  
Sbjct: 548 FLIGMEEGIFPHNR--------SLEDDDEM--------------------------EEER 573

Query: 649 RLLYVGMTRASDQLIIC 665
           RL YVG+TRA ++L++ 
Sbjct: 574 RLAYVGITRAEEELVLT 590


>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain
           (RecB), N-terminal domain {Escherichia coli [TaxId:
           562]}
          Length = 485

 Score =  101 bits (251), Expect = 3e-22
 Identities = 35/195 (17%), Positives = 69/195 (35%), Gaps = 19/195 (9%)

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
                  K   +  +    +  D+     +    L        +       K++   L F
Sbjct: 292 RFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGF 351

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           +D++   +    + +    +   I       +IDE QDT   Q+ + R +          
Sbjct: 352 DDMLSRLDSA-LRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH-------- 402

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
           H     L  +GD KQ+IY+F GA+    ++ +                  L  ++RS   
Sbjct: 403 HQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH----------YTLDTNWRSAPG 452

Query: 270 ILTVVDKVFSIPENA 284
           ++  V+K+FS  ++A
Sbjct: 453 MVNSVNKLFSQTDDA 467


>d1pjra2 c.37.1.19 (A:319-651) DEXX box DNA helicase {Bacillus
           stearothermophilus, PcrA [TaxId: 1422]}
          Length = 333

 Score = 78.6 bits (192), Expect = 2e-15
 Identities = 66/333 (19%), Positives = 114/333 (34%), Gaps = 60/333 (18%)

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
           A+ +A  I   +         ++   + +D  VL R    + ++      LK +  I   
Sbjct: 15  AQFVAGRIREAV---------ERGERRYRDFAVLYRTNAQSRVME--EMLLKAN--IPYQ 61

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
                   D   IKD++A  R I + +DDLS + ++  P        I K+     + E 
Sbjct: 62  IVGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTIDKLVRYAADHEL 121

Query: 466 VY------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
                     +                 + +   + ++ S  +    +L     R+   +
Sbjct: 122 SLFEALGELEMIGLGAKAAGALAAFRSQLEQWTQLQEYVSVTELVEEVLDKSGYREMLKA 181

Query: 520 RFGNEVIDVLDEFLNF----TLRNEQNSYSSLQELISELEQYPPTIKRA---HSANHNEV 572
               E    L+    F          +   SL   +++L       +      +A  + V
Sbjct: 182 ERTIEAQSRLENLDEFLSVTKHFENVSDDKSLIAFLTDLALISDLDELDGTEQAAEGDAV 241

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            +MT+H AKGLE PVVFL+     +F H          SL DD  +              
Sbjct: 242 MLMTLHAAKGLEFPVVFLIGMEEGIFPHNR--------SLEDDDEM-------------- 279

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                       EE  RL YVG+TRA ++L++ 
Sbjct: 280 ------------EEERRLAYVGITRAEEELVLT 300


>d1uaaa2 c.37.1.19 (A:308-640) DEXX box DNA helicase {Escherichia
           coli, RepD [TaxId: 562]}
          Length = 333

 Score = 64.0 bits (154), Expect = 5e-11
 Identities = 51/335 (15%), Positives = 103/335 (30%), Gaps = 63/335 (18%)

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
           A R+            + ++      Q KD  +L R    + +       ++N   I   
Sbjct: 17  AERVT---------GELIAHHFVNKTQYKDYAILYRGNHQSRVFE--KFLMQNR--IPYK 63

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
            +          IKDL+A  R + + +DD +F+ ++ +P        + K+         
Sbjct: 64  ISGGTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKREIGPATLKKLGEWAMTRNK 123

Query: 466 VYEY----------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
                         +       +++F H +  I  L       +  D    +       +
Sbjct: 124 SMFTASFDMGLSQTLSGRGYEALTRFTHWLAEIQRLAEREPIAAVRDLIHGMDYESWLYE 183

Query: 516 QFISRFGN-----EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN 570
              S          V  +          +E +   +L ++++         +       +
Sbjct: 184 TSPSPKAAEMRMKNVNQLFSWMTEMLEGSELDEPMTLTQVVTRFTLRDMMERGESEEELD 243

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
           +V++MT+H +KGLE P V++V        H+                             
Sbjct: 244 QVQLMTLHASKGLEFPYVYMVGMEEGFLPHQ----------------------------- 274

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                   + +   +E  RL YVG+TRA  +L   
Sbjct: 275 ------SSIDEDNIDEERRLAYVGITRAQKELTFT 303


>d1w36c2 c.37.1.19 (C:348-817) Exodeoxyribonuclease V gamma chain
           (RecC), N-terminal domain {Escherichia coli [TaxId:
           562]}
          Length = 470

 Score = 62.0 bits (149), Expect = 2e-10
 Identities = 40/349 (11%), Positives = 88/349 (25%), Gaps = 77/349 (22%)

Query: 371 IQAKDILVLVRKRKD-TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
           +  +DI+V+V      +P I  +      D  +    +DR     H  ++  ++L     
Sbjct: 56  LTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPD 115

Query: 430 SQEDDLSFVCMLKSPL----FNFSEDDIFKI-------------CTQRHETETVYEYIQK 472
           S+      + +L  P+    F+ +E+ +  +                      +    Q 
Sbjct: 116 SRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQH 175

Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF----------- 521
               G+++                     +   LI          + +            
Sbjct: 176 TWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQER 235

Query: 522 --------------------------GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE 555
                                        +       +   L  +      L  L  EL 
Sbjct: 236 PLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELA 295

Query: 556 QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
           Q     + +       V I T+   + +   VV L+     V+                 
Sbjct: 296 QRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVY----------------- 338

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                    +    +++S   K   +S +++   L    +  A  +L I
Sbjct: 339 -----PRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYI 382


>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus
           stearothermophilus, PcrA [TaxId: 1422]}
          Length = 318

 Score = 56.6 bits (135), Expect = 1e-08
 Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 21/151 (13%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           +   +   Y++   +N  LDF+DLI+ T  L  +      + +    +  +I IDE QDT
Sbjct: 172 VVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVP---DVLHYYQYKFQYIHIDEYQDT 228

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +  Q+ +++ L              + + AVGD  QSIY + GA+ + +L  +R      
Sbjct: 229 NRAQYTLVKKL----------AERFQNICAVGDADQSIYRWRGADIQNILSFERDYPNAK 278

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
                    I L  ++RST  IL   ++V  
Sbjct: 279 V--------ILLEQNYRSTKRILQAANEVIE 301


>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia
           coli, RepD [TaxId: 562]}
          Length = 306

 Score = 47.4 bits (111), Expect = 5e-06
 Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 21/151 (13%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           +  +    Y+   K   VLDF+DLI+    LL+  +    +R +   +I ++L+DE QDT
Sbjct: 162 IFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQANE---EVRKRWQNKIRYLLVDEYQDT 218

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +  Q+           + K    S      VGD+ QSIYS+ GA P+        N    
Sbjct: 219 NTSQY----------ELVKLLVGSRARFTVVGDDDQSIYSWRGARPQ--------NLVLL 260

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           +       +I+L  ++RS+  IL   + + +
Sbjct: 261 SQDFPALKVIKLEQNYRSSGRILKAANILIA 291


>d1w36d2 c.37.1.19 (D:361-606) Exodeoxyribonuclease V alpha chain
           (RecD) {Escherichia coli [TaxId: 562]}
          Length = 246

 Score = 29.8 bits (66), Expect = 1.1
 Identities = 6/17 (35%), Positives = 10/17 (58%)

Query: 649 RLLYVGMTRASDQLIIC 665
            L+Y  +TRA  +L + 
Sbjct: 204 ELVYTAVTRARRRLSLY 220


>d1zroa2 a.264.1.1 (A:283-596) Erythrocyte binding antigen region II
           {Plasmodium falciparum [TaxId: 5833]}
          Length = 314

 Score = 28.5 bits (63), Expect = 2.3
 Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYK-----MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFED 151
           KE + K ++E+ K   ++  Y+        S   S+    YL  + E+    N   +F++
Sbjct: 244 KEWISKKKEEYNKQAKQYQEYQKGNNYKMYSEFKSIKPEVYLKKYSEKCSNLNFEDEFKE 303

Query: 152 LIINTN 157
            + +  
Sbjct: 304 ELHSDY 309


>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III
           {Escherichia coli [TaxId: 562]}
          Length = 268

 Score = 27.4 bits (59), Expect = 5.4
 Identities = 21/168 (12%), Positives = 48/168 (28%), Gaps = 5/168 (2%)

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           LQE     + +P         N         +    L       V  G      +  +++
Sbjct: 32  LQETKVHDDMFPLEEVAKLGYNVFYHGQKGHYGVALLTKETPIAVRRGFPGDDEEAQRRI 91

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
            +    +    + +         +    +    K    +     L   + R +  LI+  
Sbjct: 92  IMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGD 151

Query: 667 HSNTSNE-----KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
            + +  +      + N++ W      SF  +ER    +L +    D +
Sbjct: 152 MNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDRLMSWGLVDTF 199


>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 27.1 bits (59), Expect = 6.3
 Identities = 22/196 (11%), Positives = 57/196 (29%), Gaps = 20/196 (10%)

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
            ++ L+R + +           F+    L++K L  L  +   ++  +            
Sbjct: 221 AVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETIL 280

Query: 448 FSEDDIFKICTQRHETET---VYEYIQKFANCGISKFQHV----------------IKYI 488
               +  K    +H       ++E I    +        V                ++Y+
Sbjct: 281 NKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYL 340

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
             L  +    S       +    +     +    +  +      L + + +  N+   + 
Sbjct: 341 A-LESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVA 399

Query: 549 ELISELEQYPPTIKRA 564
           E++S LE    +I+  
Sbjct: 400 EMLSYLETADYSIREE 415


>d1kqra_ b.29.1.14 (A:) vp4 sialic acid binding domain {Rhesus
           rotavirus [TaxId: 10969]}
          Length = 160

 Score = 27.0 bits (60), Expect = 6.7
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 185 VQDTSLIQW---EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
           + + S  QW   +V+++     +       S   L+AV      IY+++G  P
Sbjct: 66  IANASQTQWKFIDVVKTTQNGSYSQYGPLQSTPKLYAVMKHNGKIYTYNGETP 118


>d1igwa_ c.1.12.7 (A:) Isocitrate lyase {Escherichia coli [TaxId:
           562]}
          Length = 416

 Score = 26.9 bits (59), Expect = 6.8
 Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 19/93 (20%)

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
           Q++ ++ G KF  I L     S           F++ + A   ++               
Sbjct: 336 QQQLSDMGYKFQFITLA-GIHSMW---------FNMFDLANAYAQGEGMK--------HY 377

Query: 305 VGTVQLWEQVVSQHDSQC-NPQQESWTSYFDSL 336
           V  VQ  E   ++      + QQE  T YFD +
Sbjct: 378 VEKVQQPEFAAAKDGYTFVSHQQEVGTGYFDKV 410


>d2i9wa1 d.17.4.30 (A:46-158) Hypothetical protein Psyc2064
           {Psychrobacter arcticus [TaxId: 334543]}
          Length = 113

 Score = 26.8 bits (59), Expect = 8.0
 Identities = 6/29 (20%), Positives = 8/29 (27%)

Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQK 738
             Y   T  P    L   + I+    E  
Sbjct: 23  PEYIVKTTLPAQQDLLDIKAIENWAKETD 51


>d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 158

 Score = 26.7 bits (58), Expect = 9.8
 Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 18/74 (24%)

Query: 688 SFHNDERVKK-----------IKLTNSINKDEWIAYEWSTHH-------PENTPLEREET 729
           S+ N+ R+ +           IK+    N    I ++   +              E+   
Sbjct: 85  SYLNNNRMIQGTKFLLQDGDEIKIIWDKNNKFVIGFKVEINDTTGLFNEGLGMLQEQRVV 144

Query: 730 IKQLMDEQKIPKKL 743
           +KQ  +E+ + KKL
Sbjct: 145 LKQTAEEKDLVKKL 158


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0443    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,453,543
Number of extensions: 164517
Number of successful extensions: 485
Number of sequences better than 10.0: 1
Number of HSP's gapped: 471
Number of HSP's successfully gapped: 29
Length of query: 952
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 858
Effective length of database: 1,116,976
Effective search space: 958365408
Effective search space used: 958365408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.5 bits)