Query 537021.9.peg.414_1 Match_columns 45 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Tue May 24 19:07:23 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_414.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1i25_A Huwentoxin-II, HWTX-II; 12.3 43 0.0018 15.8 0.3 22 2-23 12-33 (37) 2 2edn_A Myosin-binding protein 11.6 98 0.0041 13.9 2.8 22 2-23 91-112 (118) 3 2jjs_C Leukocyte surface antig 11.1 1E+02 0.0043 13.8 2.4 22 4-25 92-113 (127) 4 1pko_A Myelin oligodendrocyte 8.3 1.3E+02 0.0056 13.2 2.4 22 2-23 96-117 (139) 5 2xcy_A Extracellular sialidase 7.5 1.4E+02 0.0061 13.0 2.7 18 6-23 338-355 (386) 6 2pkd_A SLAM family member 5; s 6.7 1.6E+02 0.0067 12.8 2.5 22 3-24 84-105 (111) 7 3cx2_A Myosin-binding protein 6.2 1.7E+02 0.0071 12.7 2.6 22 3-24 84-105 (108) 8 2bf6_A Sialidase, EXO-alpha-si 5.8 1.8E+02 0.0075 12.6 2.4 17 6-22 413-429 (449) 9 2ptt_B Natural killer cell rec 4.7 2.1E+02 0.0089 12.2 2.5 21 3-24 87-107 (112) 10 1bdf_A RNA polymerase alpha su 4.6 2E+02 0.0086 12.3 0.9 13 27-39 223-235 (235) No 1 >1i25_A Huwentoxin-II, HWTX-II; neurotoxin, insecticidal toxin, disulfide bonds; NMR {Ornithoctonus huwena} SCOP: g.3.6.2 Probab=12.30 E-value=43 Score=15.81 Aligned_cols=22 Identities=36% Similarity=0.717 Sum_probs=18.0 Q ss_pred CCCCEEEEEEECCCCEEEEEEE Q ss_conf 8761026877216814687635 Q 537021.9.peg.4 2 SEGYYPCKVNLENGELNCIFEF 23 (45) Q Consensus 2 segyypckvnlengelncifef 23 (45) .||--|||-+--.|...|-|.| T Consensus 12 k~g~kpck~kk~kggwkckfn~ 33 (37) T 1i25_A 12 KEGDKPCKKKKCKGGWKCKFNM 33 (37) T ss_dssp BCSSSBCBCCCCCTTEEECSSC T ss_pred CCCCCCCCCCCCCCCCEEEEEE T ss_conf 1678888766688773676768 No 2 >2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=11.61 E-value=98 Score=13.94 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=18.6 Q ss_pred CCCCEEEEEEECCCCEEEEEEE Q ss_conf 8761026877216814687635 Q 537021.9.peg.4 2 SEGYYPCKVNLENGELNCIFEF 23 (45) Q Consensus 2 segyypckvnlengelncifef 23 (45) ..|.|-|.+.-..|+-.|-|.. T Consensus 91 D~G~Y~C~asN~~G~~~~~~~L 112 (118) T 2edn_A 91 DRGYYRLEVKAKDTCDSCGFNI 112 (118) T ss_dssp TCSCEEEEEECSSCEEEEEECC T ss_pred HCEEEEEEEEECCCCEEEEEEE T ss_conf 0989999999899868999899 No 3 >2jjs_C Leukocyte surface antigen CD47; signal regulatory protein alpha, immunoglobulin superfamily, transmembrane, phosphoprotein, paired receptor; HET: NAG; 1.85A {Homo sapiens} PDB: 2jjt_C* 2vsc_A* Probab=11.09 E-value=1e+02 Score=13.84 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=17.5 Q ss_pred CCEEEEEEECCCCEEEEEEEHH Q ss_conf 6102687721681468763569 Q 537021.9.peg.4 4 GYYPCKVNLENGELNCIFEFQF 25 (45) Q Consensus 4 gyypckvnlengelncifefqf 25 (45) |-|-|.|...+.+-.-+.+.|. T Consensus 92 G~Y~C~V~~~~~~~e~~v~Lq~ 113 (127) T 2jjs_C 92 GNYTCEVTELTREGETIIELKY 113 (127) T ss_dssp EEEEEEEEETTEEEEEEEEEEE T ss_pred CEEEEEEEECCCEEEEEEEEEE T ss_conf 7099999989940689999999 No 4 >1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A Probab=8.27 E-value=1.3e+02 Score=13.24 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=14.7 Q ss_pred CCCCEEEEEEECCCCEEEEEEE Q ss_conf 8761026877216814687635 Q 537021.9.peg.4 2 SEGYYPCKVNLENGELNCIFEF 23 (45) Q Consensus 2 segyypckvnlengelncifef 23 (45) .+|.|-|.|.-.++.-....+. T Consensus 96 D~G~Y~C~v~~~~~~~~~~v~L 117 (139) T 1pko_A 96 DEGGYTCFFRDHSYQEEAAVEL 117 (139) T ss_dssp GCEEEEEEEEETTEEEEEEEEE T ss_pred HCCEEEEEEEECCCEEEEEEEE T ss_conf 9939999999789769999999 No 5 >2xcy_A Extracellular sialidase/neuraminidase, putative; hydrolase, glycosidase; 1.84A {Aspergillus fumigatus} Probab=7.48 E-value=1.4e+02 Score=13.05 Aligned_cols=18 Identities=11% Similarity=0.231 Sum_probs=16.1 Q ss_pred EEEEEEECCCCEEEEEEE Q ss_conf 026877216814687635 Q 537021.9.peg.4 6 YPCKVNLENGELNCIFEF 23 (45) Q Consensus 6 ypckvnlengelncifef 23 (45) |||-+.+.+|++.++||- T Consensus 338 Ys~l~~~~dg~i~vlYE~ 355 (386) T 2xcy_A 338 YSSMTKTGDYKIGALVES 355 (386) T ss_dssp EEEEEECTTSCEEEEEEE T ss_pred CCEEEECCCCEEEEEEEC T ss_conf 883499389959999983 No 6 >2pkd_A SLAM family member 5; signaling lymphocyte activation molecule, IGV, immunoglobulin variable, IGC, immunoglobulin constant, signaling protein; 2.04A {Homo sapiens} Probab=6.69 E-value=1.6e+02 Score=12.83 Aligned_cols=22 Identities=14% Similarity=0.318 Sum_probs=15.9 Q ss_pred CCCEEEEEEECCCCEEEEEEEH Q ss_conf 7610268772168146876356 Q 537021.9.peg.4 3 EGYYPCKVNLENGELNCIFEFQ 24 (45) Q Consensus 3 egyypckvnlengelncifefq 24 (45) +|-|-|.|..+++......+|+ T Consensus 84 sG~Y~C~v~~~~~~~~~~~~~~ 105 (111) T 2pkd_A 84 AGDYKADINTQADPYTTTKRYN 105 (111) T ss_dssp CEEEEEEEEESSTTSEEEEEEE T ss_pred CEEEEEEEEECCCCCEEEEEEE T ss_conf 9779999997389958999999 No 7 >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Probab=6.24 E-value=1.7e+02 Score=12.69 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=17.5 Q ss_pred CCCEEEEEEECCCCEEEEEEEH Q ss_conf 7610268772168146876356 Q 537021.9.peg.4 3 EGYYPCKVNLENGELNCIFEFQ 24 (45) Q Consensus 3 egyypckvnlengelncifefq 24 (45) .|-|-|.+.-+.|+-.|-+..+ T Consensus 84 ~G~Y~C~a~N~~G~~~~~~~L~ 105 (108) T 3cx2_A 84 TGSYRCEVSTKDKFDCSNFNLT 105 (108) T ss_dssp CEEEEEEEECSSCEEEEEEEEE T ss_pred CEEEEEEEEECCCEEEEEEEEE T ss_conf 9789999998998699999999 No 8 >2bf6_A Sialidase, EXO-alpha-sialidase; sialic acid, hydrolase; HET: SIA; 0.97A {Clostridium perfringens} PDB: 2vk5_A 2vk6_A* 2vk7_A* Probab=5.84 E-value=1.8e+02 Score=12.57 Aligned_cols=17 Identities=35% Similarity=0.925 Sum_probs=14.5 Q ss_pred EEEEEEECCCCEEEEEE Q ss_conf 02687721681468763 Q 537021.9.peg.4 6 YPCKVNLENGELNCIFE 22 (45) Q Consensus 6 ypckvnlengelncife 22 (45) |||-+.+.+|.+-|+|| T Consensus 413 Ys~~~~~~dg~i~~~yE 429 (449) T 2bf6_A 413 YSCLTELSNGNIGLLYE 429 (449) T ss_dssp CEEEEECTTSCEEEEEC T ss_pred CCEEEECCCCEEEEEEE T ss_conf 87058979997999998 No 9 >2ptt_B Natural killer cell receptor 2B4; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptu_A 1z2k_A Probab=4.74 E-value=2.1e+02 Score=12.17 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=16.0 Q ss_pred CCCEEEEEEECCCCEEEEEEEH Q ss_conf 7610268772168146876356 Q 537021.9.peg.4 3 EGYYPCKVNLENGELNCIFEFQ 24 (45) Q Consensus 3 egyypckvnlengelncifefq 24 (45) .|.|-|.|.-++|+. +...|+ T Consensus 87 sG~Y~c~v~~~~~~~-~~~~~~ 107 (112) T 2ptt_B 87 SGHYLLEITNTGGKV-CNKNFQ 107 (112) T ss_dssp CEEEEEEEECTTCBE-EEEEEE T ss_pred CEEEEEEEEECCCEE-EEEEEE T ss_conf 869999999799949-999999 No 10 >1bdf_A RNA polymerase alpha subunit; nucleotidyltransferase, assemble; 2.50A {Escherichia coli} SCOP: d.74.3.1 d.181.1.1 Probab=4.56 E-value=2e+02 Score=12.26 Aligned_cols=13 Identities=38% Similarity=0.659 Sum_probs=0.0 Q ss_pred HHHHHHHHHCCCE Q ss_conf 9999998721301 Q 537021.9.peg.4 27 ILKKLFDIFGNLR 39 (45) Q Consensus 27 ilkklfdifgnlr 39 (45) ||.+.|+.|.|+| T Consensus 223 iL~~~f~~f~~~~ 235 (235) T 1bdf_A 223 ILAEQLEAFVDLR 235 (235) T ss_dssp HHHHHGGGGC--- T ss_pred HHHHHHHHHHCCC T ss_conf 9999999875379 Done!