BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.414_1
         (45 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.414_1 
          Length = 45

 Score = 91.3 bits (225), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 45/45 (100%), Positives = 45/45 (100%)

Query: 1  LSEGYYPCKVNLENGELNCIFEFQFVILKKLFDIFGNLRIMGKYL 45
          LSEGYYPCKVNLENGELNCIFEFQFVILKKLFDIFGNLRIMGKYL
Sbjct: 1  LSEGYYPCKVNLENGELNCIFEFQFVILKKLFDIFGNLRIMGKYL 45


>gi|254780332|ref|YP_003064745.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 504

 Score = 21.2 bits (43), Expect = 3.9,   Method: Composition-based stats.
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 27 ILKKLFDIFGNLRIMGK 43
          I +K+F+I G L  MGK
Sbjct: 60 IHQKIFEIMGKLVHMGK 76


>gi|254780493|ref|YP_003064906.1| phosphoribosylaminoimidazole-succinocarboxamide synthase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 323

 Score = 21.2 bits (43), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 8   CKVNLENGELNCIFEFQFVILKK 30
           CK+ LENG +    +++F I KK
Sbjct: 189 CKLALENGLILVDSKYEFGIDKK 211


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.330    0.153    0.475 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,423
Number of Sequences: 1233
Number of extensions: 744
Number of successful extensions: 4
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 45
length of database: 328,796
effective HSP length: 18
effective length of query: 27
effective length of database: 306,602
effective search space:  8278254
effective search space used:  8278254
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 31 (16.5 bits)