HHsearch alignment for GI: peg_42 and conserved domain: COG0257
>COG0257 RpmJ Ribosomal protein L36 [Translation, ribosomal structure and biogenesis].
Probab=99.74 E-value=4.7e-19 Score=116.80 Aligned_cols=38 Identities=47% Similarity=0.712 Sum_probs=35.6
Q ss_pred EEEHHHHHHHHHCCCCCEEEEECCEEEEEECCCCCHHHCCC
Q ss_conf 97458899885016787099988889999877975232079
Q 537021.9.peg.4 4 VKVRNSLRVLKLRHRGNKVVRRKNVIRIVNKLNPRFKVRQG 44 (44)
Q Consensus 4 MKvr~Slk~lk~r~~~c~~VrRkGrvyVick~nPrhK~RQG 44 (44)
T Consensus 1 MKV~~SvK~---~c~~CkivrRkGrv~VIck~~prhKqrQg 38 (38)
T COG0257 1 MKVRASVKK---RCRDCKIVRRKGRVYVICKKNPKHKQRQG 38 (38)
T ss_pred CCCCCCCCC---CCCCCEEEEECCEEEEEECCCCCHHHHCC
T ss_conf 931134544---36776589755879999169963332169