HHsearch alignment for GI: peg_42 and conserved domain: COG0257

>COG0257 RpmJ Ribosomal protein L36 [Translation, ribosomal structure and biogenesis].
Probab=99.74  E-value=4.7e-19  Score=116.80  Aligned_cols=38  Identities=47%  Similarity=0.712  Sum_probs=35.6

Q ss_pred             EEEHHHHHHHHHCCCCCEEEEECCEEEEEECCCCCHHHCCC
Q ss_conf             97458899885016787099988889999877975232079
Q 537021.9.peg.4    4 VKVRNSLRVLKLRHRGNKVVRRKNVIRIVNKLNPRFKVRQG   44 (44)
Q Consensus         4 MKvr~Slk~lk~r~~~c~~VrRkGrvyVick~nPrhK~RQG   44 (44)
T Consensus         1 MKV~~SvK~---~c~~CkivrRkGrv~VIck~~prhKqrQg   38 (38)
T COG0257           1 MKVRASVKK---RCRDCKIVRRKGRVYVICKKNPKHKQRQG   38 (38)
T ss_pred             CCCCCCCCC---CCCCCEEEEECCEEEEEECCCCCHHHHCC
T ss_conf             931134544---36776589755879999169963332169