Query         537021.9.peg.42_1
Match_columns 44
No_of_seqs    106 out of 118
Neff          2.6 
Searched_HMMs 33803
Date          Sun May 22 18:13:28 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_42.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3bbo_6 Ribosomal protein L36;  99.8 1.2E-20 3.6E-25  124.4  -0.9   38    4-44      1-38  (104)
  2 >3i1n_4 50S ribosomal protein   99.7 4.1E-20 1.2E-24  121.8  -1.7   38    4-44      1-38  (38)
  3 >2zjr_4 50S ribosomal protein   99.6 9.2E-18 2.7E-22  110.0  -1.7   37    4-44      1-37  (37)
  4 >2ju4_A GMP-PDE gamma, retinal  29.7      16 0.00049   18.3   0.5   10   35-44     26-35  (87)
  5 >1cz6_A Protein (androctonin);  12.3      61  0.0018   15.5   0.3   21   17-37      4-24  (26)
  6 2vqc_A Dna Binding Winged-Heli   5.9 2.4E+02  0.0071   12.4   2.6   29    6-34     49-79  (118)
  7 >2ece_A 462AA long hypothetica   5.2 2.7E+02  0.0079   12.2   1.7   15   25-39     33-48  (114)
  8 >1z8y_A Spike glycoprotein E1;   4.8 2.9E+02  0.0085   12.1   1.3   15   18-32     26-40  (70)
  9 >2yvc_D Neprilysin; protein-pe   4.2 2.6E+02  0.0078   12.2   0.5   14   30-43     10-23  (26)
 10 >1yiq_A Quinohemoprotein alcoh   3.8 3.5E+02    0.01   11.6   1.6   15   25-39     27-41  (71)

No 1  
>>3bbo_6 Ribosomal protein L36; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Arabidopsis thaliana} (6:)
Probab=99.77  E-value=1.2e-20  Score=124.41  Aligned_cols=38  Identities=34%  Similarity=0.507  Sum_probs=36.0

Q ss_pred             EEEHHHHHHHHHCCCCCEEEEECCEEEEEECCCCCHHHCCC
Q ss_conf             97458899885016787099988889999877975232079
Q 537021.9.peg.4    4 VKVRNSLRVLKLRHRGNKVVRRKNVIRIVNKLNPRFKVRQG   44 (44)
Q Consensus         4 MKvr~Slk~lk~r~~~c~~VrRkGrvyVick~nPrhK~RQG   44 (44)
                      |||++|||+   ||+||++|||+||+|||||+|||||||||
T Consensus         1 MKVr~slKk---rc~~C~vVrR~Gr~yViCk~nPrhKqrQG   38 (104)
T 3bbo_6            1 MKVRSSVKK---MCEFCKTVKRRGRVYVICSSNPKHKQRQG   38 (104)
T ss_dssp             CBCCSCCCC---CSTTBCCEEETTEEEBCBSSCGGGCBCCC
T ss_pred             CCCHHHHHH---HCCCCEEEEECCEEEEEECCCCCHHHHCC
T ss_conf             971057775---26686399978999998089963543336


No 2  
>>3i1n_4 50S ribosomal protein L36; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_4 1p86_4 1vs8_4 2aw4_4 2awb_4 1vs6_4 2i2v_4 2j28_4 2i2t_4* 2qao_4* 2qba_4* 2qbc_4* 2qbe_4 2qbg_4 2qbi_4* 2qbk_4* 2qov_4 2qox_4 2qoz_4* 2qp1_4* ... (4:)
Probab=99.75  E-value=4.1e-20  Score=121.75  Aligned_cols=38  Identities=45%  Similarity=0.722  Sum_probs=35.8

Q ss_pred             EEEHHHHHHHHHCCCCCEEEEECCEEEEEECCCCCHHHCCC
Q ss_conf             97458899885016787099988889999877975232079
Q 537021.9.peg.4    4 VKVRNSLRVLKLRHRGNKVVRRKNVIRIVNKLNPRFKVRQG   44 (44)
Q Consensus         4 MKvr~Slk~lk~r~~~c~~VrRkGrvyVick~nPrhK~RQG   44 (44)
                      |||++|||++|   .+|++|||+|++||||++|||||||||
T Consensus         1 MKVr~svKk~C---~~C~ivrR~grv~ViC~~nPrHKQRQG   38 (38)
T 3i1n_4            1 MKVRASVKKLC---RNCKIVKRDGVIRVICSAEPKHKQRQG   38 (38)
T ss_dssp             CBCCSCCCCCS---TTCCCEEETTEEEBCCSSCGGGCBCCC
T ss_pred             CCCCHHHHHCC---CCCCEEEECCEEEEEECCCCCCCCCCC
T ss_conf             96020213007---897189846889999089985001278


No 3  
>>2zjr_4 50S ribosomal protein L36; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} (4:)
Probab=99.63  E-value=9.2e-18  Score=109.96  Aligned_cols=37  Identities=38%  Similarity=0.519  Sum_probs=35.0

Q ss_pred             EEEHHHHHHHHHCCCCCEEEEECCEEEEEECCCCCHHHCCC
Q ss_conf             97458899885016787099988889999877975232079
Q 537021.9.peg.4    4 VKVRNSLRVLKLRHRGNKVVRRKNVIRIVNKLNPRFKVRQG   44 (44)
Q Consensus         4 MKvr~Slk~lk~r~~~c~~VrRkGrvyVick~nPrhK~RQG   44 (44)
                      |||++|+|++|+   +|++|||+|++||||+ ||+||||||
T Consensus         1 mKVr~svKk~C~---~C~~irR~g~v~ViC~-nPkHKQRQG   37 (37)
T 2zjr_4            1 MKVRSSVKKMCD---NCKVVRRHGRVLVICS-NVKHKQRQG   37 (37)
T ss_dssp             CEECSSCCCCST---TCCCEECSSCEEECCS-SSTTCEECC
T ss_pred             CCCCHHHHHHCC---CCCEEEECCEEEEEEC-CCCCCCCCC
T ss_conf             961234353266---8609986788999929-997433479


No 4  
>>2ju4_A GMP-PDE gamma, retinal ROD rhodopsin-sensitive CGMP 3',5'- cyclic phosphodiesterase subunit gamma...; intrinsic disordered protein; HET: RCY; NMR {Bos taurus} (A:)
Probab=29.75  E-value=16  Score=18.30  Aligned_cols=10  Identities=40%  Similarity=0.434  Sum_probs=7.6

Q ss_pred             CCCCHHHCCC
Q ss_conf             7975232079
Q 537021.9.peg.4   35 LNPRFKVRQG   44 (44)
Q Consensus        35 ~nPrhK~RQG   44 (44)
                      --|+|||||-
T Consensus        26 GPpKFKqR~t   35 (87)
T 2ju4_A           26 GPPKXKQRQT   35 (87)
T ss_dssp             SSCCCSSCSS
T ss_pred             CCCCCCCCCC
T ss_conf             9975430001


No 5  
>>1cz6_A Protein (androctonin); peptide, beta sheet; NMR {Androctonus australis} (A:)
Probab=12.31  E-value=61  Score=15.46  Aligned_cols=21  Identities=24%  Similarity=0.208  Sum_probs=15.4

Q ss_pred             CCCCEEEEECCEEEEEECCCC
Q ss_conf             678709998888999987797
Q 537021.9.peg.4   17 HRGNKVVRRKNVIRIVNKLNP   37 (44)
Q Consensus        17 ~~~c~~VrRkGrvyVick~nP   37 (44)
                      |+.-++-||+|--|--|...|
T Consensus         4 crqikicrrrggcyykctnrp   24 (26)
T 1cz6_A            4 CRQIKICRRRGGCYYKCTNRP   24 (26)
T ss_dssp             CCEEEECCSSSCCEEEECCCC
T ss_pred             HHHHHHHHHCCCEEEECCCCC
T ss_conf             666577775286687756888


No 6  
>2vqc_A Dna Binding Winged-Helix Protein, F-112, {Sulfolobus Spindle-Shaped Virus 1} (A:)
Probab=5.92  E-value=2.4e+02  Score=12.44  Aligned_cols=29  Identities=24%  Similarity=0.187  Sum_probs=18.7

Q ss_pred             EHHHHHHHHHCCCCCEEEEECCE--EEEEEC
Q ss_conf             45889988501678709998888--999987
Q 537021.9.peg.4    6 VRNSLRVLKLRHRGNKVVRRKNV--IRIVNK   34 (44)
Q Consensus         6 vr~Slk~lk~r~~~c~~VrRkGr--vyVick   34 (44)
                      +-..||.+|++|.|---|-.+||  +|-.-|
T Consensus        49 Iqr~Lk~iCe~HpdECevq~knRkTvfkwik   79 (118)
T 2vqc_A           49 IQRALKAICERHPDECEVQYKNRKTTFKWIK   79 (118)
T ss_dssp             HHHHHHHHHHHCTTTEEEEECSSCEEEEECC
T ss_pred             HHHHHHHHHHCCCCCCEEEECCCHHHHHHHH
T ss_conf             9999999974087510010036256688774


No 7  
>>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} (A:72-185)
Probab=5.25  E-value=2.7e+02  Score=12.21  Aligned_cols=15  Identities=40%  Similarity=0.561  Sum_probs=11.4

Q ss_pred             ECCEEEEEEC-CCCCH
Q ss_conf             8888999987-79752
Q 537021.9.peg.4   25 RKNVIRIVNK-LNPRF   39 (44)
Q Consensus        25 RkGrvyVick-~nPrh   39 (44)
                      +-+|+||+-. ++||.
T Consensus        33 ~SsRIyviDv~tdPr~   48 (114)
T 2ece_A           33 RSSRIYIIDTKPNPRE   48 (114)
T ss_dssp             TTCCEEEEECCSCTTS
T ss_pred             CCCCEEEEECCCCCCC
T ss_conf             7785899968789899


No 8  
>>1z8y_A Spike glycoprotein E1; icosahedral enveloped virus, cryo-electron microscopy, icosahedral virus; 9.00A {Sindbis virus} (A:41-50,A:115-126,A:170-217)
Probab=4.82  E-value=2.9e+02  Score=12.05  Aligned_cols=15  Identities=20%  Similarity=0.193  Sum_probs=11.7

Q ss_pred             CCCEEEEECCEEEEE
Q ss_conf             787099988889999
Q 537021.9.peg.4   18 RGNKVVRRKNVIRIV   32 (44)
Q Consensus        18 ~~c~~VrRkGrvyVi   32 (44)
                      -|.++|..+|-||-+
T Consensus        26 FD~KiVvykg~VYNy   40 (70)
T 1z8y_A           26 FDHKVVIHRGLVYNY   40 (70)
T ss_dssp             CCSEEEESSSCEEEC
T ss_pred             CCCEEEEECCEEECC
T ss_conf             873479975604126


No 9  
>>2yvc_D Neprilysin; protein-peptide complex, cell adhesion; 3.20A {Mus musculus} (D:)
Probab=4.20  E-value=2.6e+02  Score=12.24  Aligned_cols=14  Identities=29%  Similarity=0.344  Sum_probs=9.8

Q ss_pred             EEEECCCCCHHHCC
Q ss_conf             99987797523207
Q 537021.9.peg.4   30 RIVNKLNPRFKVRQ   43 (44)
Q Consensus        30 yVick~nPrhK~RQ   43 (44)
                      --||-..|+-|||.
T Consensus        10 tdinapkpkkkqr~   23 (26)
T 2yvc_D           10 TDINAPKPKKKQRX   23 (26)
T ss_pred             CCCCCCCCCHHCCC
T ss_conf             01568884100013


No 10 
>>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} (A:301-371)
Probab=3.81  E-value=3.5e+02  Score=11.63  Aligned_cols=15  Identities=0%  Similarity=0.321  Sum_probs=11.8

Q ss_pred             ECCEEEEEECCCCCH
Q ss_conf             888899998779752
Q 537021.9.peg.4   25 RKNVIRIVNKLNPRF   39 (44)
Q Consensus        25 RkGrvyVick~nPrh   39 (44)
                      |.|-+||++..+-++
T Consensus        27 KnG~~yvlDR~tGk~   41 (71)
T 1yiq_A           27 KNGFFYVIDRATGEL   41 (71)
T ss_dssp             TTSEEEEEETTTCCE
T ss_pred             CCCEEEEEECCCCCC
T ss_conf             675078850245864


Done!