Query 537021.9.peg.42_1 Match_columns 44 No_of_seqs 106 out of 118 Neff 2.6 Searched_HMMs 33803 Date Sun May 22 18:13:28 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_42.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3bbo_6 Ribosomal protein L36; 99.8 1.2E-20 3.6E-25 124.4 -0.9 38 4-44 1-38 (104) 2 >3i1n_4 50S ribosomal protein 99.7 4.1E-20 1.2E-24 121.8 -1.7 38 4-44 1-38 (38) 3 >2zjr_4 50S ribosomal protein 99.6 9.2E-18 2.7E-22 110.0 -1.7 37 4-44 1-37 (37) 4 >2ju4_A GMP-PDE gamma, retinal 29.7 16 0.00049 18.3 0.5 10 35-44 26-35 (87) 5 >1cz6_A Protein (androctonin); 12.3 61 0.0018 15.5 0.3 21 17-37 4-24 (26) 6 2vqc_A Dna Binding Winged-Heli 5.9 2.4E+02 0.0071 12.4 2.6 29 6-34 49-79 (118) 7 >2ece_A 462AA long hypothetica 5.2 2.7E+02 0.0079 12.2 1.7 15 25-39 33-48 (114) 8 >1z8y_A Spike glycoprotein E1; 4.8 2.9E+02 0.0085 12.1 1.3 15 18-32 26-40 (70) 9 >2yvc_D Neprilysin; protein-pe 4.2 2.6E+02 0.0078 12.2 0.5 14 30-43 10-23 (26) 10 >1yiq_A Quinohemoprotein alcoh 3.8 3.5E+02 0.01 11.6 1.6 15 25-39 27-41 (71) No 1 >>3bbo_6 Ribosomal protein L36; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Arabidopsis thaliana} (6:) Probab=99.77 E-value=1.2e-20 Score=124.41 Aligned_cols=38 Identities=34% Similarity=0.507 Sum_probs=36.0 Q ss_pred EEEHHHHHHHHHCCCCCEEEEECCEEEEEECCCCCHHHCCC Q ss_conf 97458899885016787099988889999877975232079 Q 537021.9.peg.4 4 VKVRNSLRVLKLRHRGNKVVRRKNVIRIVNKLNPRFKVRQG 44 (44) Q Consensus 4 MKvr~Slk~lk~r~~~c~~VrRkGrvyVick~nPrhK~RQG 44 (44) |||++|||+ ||+||++|||+||+|||||+||||||||| T Consensus 1 MKVr~slKk---rc~~C~vVrR~Gr~yViCk~nPrhKqrQG 38 (104) T 3bbo_6 1 MKVRSSVKK---MCEFCKTVKRRGRVYVICSSNPKHKQRQG 38 (104) T ss_dssp CBCCSCCCC---CSTTBCCEEETTEEEBCBSSCGGGCBCCC T ss_pred CCCHHHHHH---HCCCCEEEEECCEEEEEECCCCCHHHHCC T ss_conf 971057775---26686399978999998089963543336 No 2 >>3i1n_4 50S ribosomal protein L36; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_4 1p86_4 1vs8_4 2aw4_4 2awb_4 1vs6_4 2i2v_4 2j28_4 2i2t_4* 2qao_4* 2qba_4* 2qbc_4* 2qbe_4 2qbg_4 2qbi_4* 2qbk_4* 2qov_4 2qox_4 2qoz_4* 2qp1_4* ... (4:) Probab=99.75 E-value=4.1e-20 Score=121.75 Aligned_cols=38 Identities=45% Similarity=0.722 Sum_probs=35.8 Q ss_pred EEEHHHHHHHHHCCCCCEEEEECCEEEEEECCCCCHHHCCC Q ss_conf 97458899885016787099988889999877975232079 Q 537021.9.peg.4 4 VKVRNSLRVLKLRHRGNKVVRRKNVIRIVNKLNPRFKVRQG 44 (44) Q Consensus 4 MKvr~Slk~lk~r~~~c~~VrRkGrvyVick~nPrhK~RQG 44 (44) |||++|||++| .+|++|||+|++||||++||||||||| T Consensus 1 MKVr~svKk~C---~~C~ivrR~grv~ViC~~nPrHKQRQG 38 (38) T 3i1n_4 1 MKVRASVKKLC---RNCKIVKRDGVIRVICSAEPKHKQRQG 38 (38) T ss_dssp CBCCSCCCCCS---TTCCCEEETTEEEBCCSSCGGGCBCCC T ss_pred CCCCHHHHHCC---CCCCEEEECCEEEEEECCCCCCCCCCC T ss_conf 96020213007---897189846889999089985001278 No 3 >>2zjr_4 50S ribosomal protein L36; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} (4:) Probab=99.63 E-value=9.2e-18 Score=109.96 Aligned_cols=37 Identities=38% Similarity=0.519 Sum_probs=35.0 Q ss_pred EEEHHHHHHHHHCCCCCEEEEECCEEEEEECCCCCHHHCCC Q ss_conf 97458899885016787099988889999877975232079 Q 537021.9.peg.4 4 VKVRNSLRVLKLRHRGNKVVRRKNVIRIVNKLNPRFKVRQG 44 (44) Q Consensus 4 MKvr~Slk~lk~r~~~c~~VrRkGrvyVick~nPrhK~RQG 44 (44) |||++|+|++|+ +|++|||+|++||||+ ||+|||||| T Consensus 1 mKVr~svKk~C~---~C~~irR~g~v~ViC~-nPkHKQRQG 37 (37) T 2zjr_4 1 MKVRSSVKKMCD---NCKVVRRHGRVLVICS-NVKHKQRQG 37 (37) T ss_dssp CEECSSCCCCST---TCCCEECSSCEEECCS-SSTTCEECC T ss_pred CCCCHHHHHHCC---CCCEEEECCEEEEEEC-CCCCCCCCC T ss_conf 961234353266---8609986788999929-997433479 No 4 >>2ju4_A GMP-PDE gamma, retinal ROD rhodopsin-sensitive CGMP 3',5'- cyclic phosphodiesterase subunit gamma...; intrinsic disordered protein; HET: RCY; NMR {Bos taurus} (A:) Probab=29.75 E-value=16 Score=18.30 Aligned_cols=10 Identities=40% Similarity=0.434 Sum_probs=7.6 Q ss_pred CCCCHHHCCC Q ss_conf 7975232079 Q 537021.9.peg.4 35 LNPRFKVRQG 44 (44) Q Consensus 35 ~nPrhK~RQG 44 (44) --|+|||||- T Consensus 26 GPpKFKqR~t 35 (87) T 2ju4_A 26 GPPKXKQRQT 35 (87) T ss_dssp SSCCCSSCSS T ss_pred CCCCCCCCCC T ss_conf 9975430001 No 5 >>1cz6_A Protein (androctonin); peptide, beta sheet; NMR {Androctonus australis} (A:) Probab=12.31 E-value=61 Score=15.46 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=15.4 Q ss_pred CCCCEEEEECCEEEEEECCCC Q ss_conf 678709998888999987797 Q 537021.9.peg.4 17 HRGNKVVRRKNVIRIVNKLNP 37 (44) Q Consensus 17 ~~~c~~VrRkGrvyVick~nP 37 (44) |+.-++-||+|--|--|...| T Consensus 4 crqikicrrrggcyykctnrp 24 (26) T 1cz6_A 4 CRQIKICRRRGGCYYKCTNRP 24 (26) T ss_dssp CCEEEECCSSSCCEEEECCCC T ss_pred HHHHHHHHHCCCEEEECCCCC T ss_conf 666577775286687756888 No 6 >2vqc_A Dna Binding Winged-Helix Protein, F-112, {Sulfolobus Spindle-Shaped Virus 1} (A:) Probab=5.92 E-value=2.4e+02 Score=12.44 Aligned_cols=29 Identities=24% Similarity=0.187 Sum_probs=18.7 Q ss_pred EHHHHHHHHHCCCCCEEEEECCE--EEEEEC Q ss_conf 45889988501678709998888--999987 Q 537021.9.peg.4 6 VRNSLRVLKLRHRGNKVVRRKNV--IRIVNK 34 (44) Q Consensus 6 vr~Slk~lk~r~~~c~~VrRkGr--vyVick 34 (44) +-..||.+|++|.|---|-.+|| +|-.-| T Consensus 49 Iqr~Lk~iCe~HpdECevq~knRkTvfkwik 79 (118) T 2vqc_A 49 IQRALKAICERHPDECEVQYKNRKTTFKWIK 79 (118) T ss_dssp HHHHHHHHHHHCTTTEEEEECSSCEEEEECC T ss_pred HHHHHHHHHHCCCCCCEEEECCCHHHHHHHH T ss_conf 9999999974087510010036256688774 No 7 >>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} (A:72-185) Probab=5.25 E-value=2.7e+02 Score=12.21 Aligned_cols=15 Identities=40% Similarity=0.561 Sum_probs=11.4 Q ss_pred ECCEEEEEEC-CCCCH Q ss_conf 8888999987-79752 Q 537021.9.peg.4 25 RKNVIRIVNK-LNPRF 39 (44) Q Consensus 25 RkGrvyVick-~nPrh 39 (44) +-+|+||+-. ++||. T Consensus 33 ~SsRIyviDv~tdPr~ 48 (114) T 2ece_A 33 RSSRIYIIDTKPNPRE 48 (114) T ss_dssp TTCCEEEEECCSCTTS T ss_pred CCCCEEEEECCCCCCC T ss_conf 7785899968789899 No 8 >>1z8y_A Spike glycoprotein E1; icosahedral enveloped virus, cryo-electron microscopy, icosahedral virus; 9.00A {Sindbis virus} (A:41-50,A:115-126,A:170-217) Probab=4.82 E-value=2.9e+02 Score=12.05 Aligned_cols=15 Identities=20% Similarity=0.193 Sum_probs=11.7 Q ss_pred CCCEEEEECCEEEEE Q ss_conf 787099988889999 Q 537021.9.peg.4 18 RGNKVVRRKNVIRIV 32 (44) Q Consensus 18 ~~c~~VrRkGrvyVi 32 (44) -|.++|..+|-||-+ T Consensus 26 FD~KiVvykg~VYNy 40 (70) T 1z8y_A 26 FDHKVVIHRGLVYNY 40 (70) T ss_dssp CCSEEEESSSCEEEC T ss_pred CCCEEEEECCEEECC T ss_conf 873479975604126 No 9 >>2yvc_D Neprilysin; protein-peptide complex, cell adhesion; 3.20A {Mus musculus} (D:) Probab=4.20 E-value=2.6e+02 Score=12.24 Aligned_cols=14 Identities=29% Similarity=0.344 Sum_probs=9.8 Q ss_pred EEEECCCCCHHHCC Q ss_conf 99987797523207 Q 537021.9.peg.4 30 RIVNKLNPRFKVRQ 43 (44) Q Consensus 30 yVick~nPrhK~RQ 43 (44) --||-..|+-|||. T Consensus 10 tdinapkpkkkqr~ 23 (26) T 2yvc_D 10 TDINAPKPKKKQRX 23 (26) T ss_pred CCCCCCCCCHHCCC T ss_conf 01568884100013 No 10 >>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} (A:301-371) Probab=3.81 E-value=3.5e+02 Score=11.63 Aligned_cols=15 Identities=0% Similarity=0.321 Sum_probs=11.8 Q ss_pred ECCEEEEEECCCCCH Q ss_conf 888899998779752 Q 537021.9.peg.4 25 RKNVIRIVNKLNPRF 39 (44) Q Consensus 25 RkGrvyVick~nPrh 39 (44) |.|-+||++..+-++ T Consensus 27 KnG~~yvlDR~tGk~ 41 (71) T 1yiq_A 27 KNGFFYVIDRATGEL 41 (71) T ss_dssp TTSEEEEEETTTCCE T ss_pred CCCEEEEEECCCCCC T ss_conf 675078850245864 Done!