Query 537021.9.peg.42_1
Match_columns 44
No_of_seqs 106 out of 118
Neff 2.6
Searched_HMMs 23785
Date Sun May 22 18:20:17 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_42.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbo_6 Ribosomal protein L36; 99.8 3.5E-21 1.5E-25 126.3 -0.9 38 4-44 1-38 (104)
2 3ofq_4 50S ribosomal protein L 99.7 4.4E-20 1.9E-24 120.8 -2.7 38 4-44 1-38 (38)
3 2zjr_4 50S ribosomal protein L 99.7 1E-18 4.3E-23 114.0 -1.7 37 4-44 1-37 (37)
4 1cz6_A Protein (androctonin); 12.2 43 0.0018 15.4 0.3 21 17-37 4-24 (26)
5 2d9i_A NEDD4-binding protein 2 10.2 1.1E+02 0.0044 13.5 1.8 34 5-38 61-94 (96)
6 2cmx_A ORF F-112, F112, hypoth 4.5 2.1E+02 0.009 11.9 2.2 23 6-28 49-71 (118)
7 2yvc_D Neprilysin; protein-pep 4.1 1.8E+02 0.0076 12.3 0.3 13 30-42 10-22 (26)
8 3lw5_F Photosystem I reaction 3.9 1.4E+02 0.0057 12.9 -0.4 10 33-42 8-17 (154)
9 2z4d_A 26S proteasome regulato 3.9 2.4E+02 0.01 11.7 0.9 13 22-34 21-33 (96)
10 1jb0_F Photosystem 1 reaction 3.9 1.2E+02 0.0049 13.3 -0.8 10 33-42 31-40 (164)
No 1
>3bbo_6 Ribosomal protein L36; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Arabidopsis thaliana} SCOP: i.1.1.1
Probab=99.79 E-value=3.5e-21 Score=126.35 Aligned_cols=38 Identities=34% Similarity=0.507 Sum_probs=36.2
Q ss_pred EEEHHHHHHHHHCCCCCEEEEECCEEEEEECCCCCHHHCCC
Q ss_conf 97458899885016787099988889999877975232079
Q 537021.9.peg.4 4 VKVRNSLRVLKLRHRGNKVVRRKNVIRIVNKLNPRFKVRQG 44 (44)
Q Consensus 4 MKvr~Slk~lk~r~~~c~~VrRkGrvyVick~nPrhK~RQG 44 (44)
|||++|||+ ||++|++|||+||+|||||+|||||||||
T Consensus 1 MKVrsSvKk---rC~~C~vVRR~GrvyViCk~nPRHKQRQG 38 (104)
T 3bbo_6 1 MKVRSSVKK---MCEFCKTVKRRGRVYVICSSNPKHKQRQG 38 (104)
T ss_dssp CBCCSCCCC---CSTTBCCEEETTEEEBCBSSCGGGCBCCC
T ss_pred CCCCHHHHH---HCCCCEEEEECCEEEEEECCCCCHHHHCC
T ss_conf 971056675---06687399878989998189974543247
No 2
>3ofq_4 50S ribosomal protein L36; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 1p85_4 1p86_4 1vs8_4 1vs6_4 2aw4_4 2awb_4 1vt2_4 2i2v_4 2j28_4 2i2t_4* 2qao_4* 2qba_4* 2qbc_4* 2qbe_4 2qbg_4 2qbi_4* 2qbk_4* 2qov_4 2qox_4 2qoz_4* ...
Probab=99.73 E-value=4.4e-20 Score=120.84 Aligned_cols=38 Identities=42% Similarity=0.681 Sum_probs=35.7
Q ss_pred EEEHHHHHHHHHCCCCCEEEEECCEEEEEECCCCCHHHCCC
Q ss_conf 97458899885016787099988889999877975232079
Q 537021.9.peg.4 4 VKVRNSLRVLKLRHRGNKVVRRKNVIRIVNKLNPRFKVRQG 44 (44)
Q Consensus 4 MKvr~Slk~lk~r~~~c~~VrRkGrvyVick~nPrhK~RQG 44 (44)
|||++|||+ +|.||++|+|+|++||||++|||||||||
T Consensus 1 MKVr~svKk---~C~~C~ivrR~Grv~ViCk~nPrhKQRQG 38 (38)
T 3ofq_4 1 MKVRASVKK---LCRNCKIVKRDGVIRVICSAEPKHKQRQG 38 (38)
T ss_dssp CBCCSCCCC---SSTTCCCEESSSSEEBCCSSCGGGCBCCC
T ss_pred CCCCHHHHH---HCCCCEEEEECCEEEEECCCCCCCCCCCC
T ss_conf 960134352---17897199866889999089986101278
No 3
>2zjr_4 50S ribosomal protein L36; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.42.1.1 PDB: 1nwx_4* 1sm1_4* 1xbp_4* 2zjp_4* 2zjq_4 1nwy_4 3cf5_4* 3dll_4* 1nkw_4 1yl3_9 2b66_9 2b9n_9 2b9p_9 1pnu_4 1pny_4 1vor_6 1vou_6 1vow_6 1voy_6 1vp0_6 ...
Probab=99.68 E-value=1e-18 Score=114.00 Aligned_cols=37 Identities=38% Similarity=0.499 Sum_probs=34.7
Q ss_pred EEEHHHHHHHHHCCCCCEEEEECCEEEEEECCCCCHHHCCC
Q ss_conf 97458899885016787099988889999877975232079
Q 537021.9.peg.4 4 VKVRNSLRVLKLRHRGNKVVRRKNVIRIVNKLNPRFKVRQG 44 (44)
Q Consensus 4 MKvr~Slk~lk~r~~~c~~VrRkGrvyVick~nPrhK~RQG 44 (44)
|||++|+|++|+ +|++|||+|++|||| +||+||||||
T Consensus 1 MKVr~SvKk~C~---~C~~irR~grv~ViC-~npkHKQRQG 37 (37)
T 2zjr_4 1 MKVRSSVKKMCD---NCKVVRRHGRVLVIC-SNVKHKQRQG 37 (37)
T ss_dssp CEECSSCCCCST---TCCCEECSSCEEECC-SSSTTCEECC
T ss_pred CCCCHHHHHHCC---CCEEEEECCEEEEEE-CCCCCCCCCC
T ss_conf 961177786543---771998668899991-9997423378
No 4
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=12.25 E-value=43 Score=15.44 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=15.2
Q ss_pred CCCCEEEEECCEEEEEECCCC
Q ss_conf 678709998888999987797
Q 537021.9.peg.4 17 HRGNKVVRRKNVIRIVNKLNP 37 (44)
Q Consensus 17 ~~~c~~VrRkGrvyVick~nP 37 (44)
|+.-++-||+|--|--|...|
T Consensus 4 crqikicrrrggcyykctnrp 24 (26)
T 1cz6_A 4 CRQIKICRRRGGCYYKCTNRP 24 (26)
T ss_dssp CCEEEECCSSSCCEEEECCCC
T ss_pred HHHHHHHHHCCCEEEECCCCC
T ss_conf 666577775286687756888
No 5
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=10.17 E-value=1.1e+02 Score=13.48 Aligned_cols=34 Identities=9% Similarity=0.176 Sum_probs=21.5
Q ss_pred EEHHHHHHHHHCCCCCEEEEECCEEEEEECCCCC
Q ss_conf 7458899885016787099988889999877975
Q 537021.9.peg.4 5 KVRNSLRVLKLRHRGNKVVRRKNVIRIVNKLNPR 38 (44)
Q Consensus 5 Kvr~Slk~lk~r~~~c~~VrRkGrvyVick~nPr 38 (44)
++++++..+-..+.-.+-.-..|.+||.-++.|+
T Consensus 61 ~lk~~V~~~L~~~~~~~~e~~~G~~~V~lk~~~~ 94 (96)
T 2d9i_A 61 RIKPAVIKYLISHSFRFSEIKPGCLKVMLKSGPS 94 (96)
T ss_dssp CHHHHHHHHHHHTTCCEECCSTTCEEEECCCCCC
T ss_pred HHHHHHHHHHHHCCCCCEECCCCEEEEEECCCCC
T ss_conf 2899999999858986106898279999608888
No 6
>2cmx_A ORF F-112, F112, hypothetical 13.2 kDa protein; sulfolobus spindle virus, thermophilic protein, hypothetical protein; 2.30A {Sulfolobus virus-like particle SSV1} PDB: 2vqc_A
Probab=4.49 E-value=2.1e+02 Score=11.93 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=17.5
Q ss_pred EHHHHHHHHHCCCCCEEEEECCE
Q ss_conf 45889988501678709998888
Q 537021.9.peg.4 6 VRNSLRVLKLRHRGNKVVRRKNV 28 (44)
Q Consensus 6 vr~Slk~lk~r~~~c~~VrRkGr 28 (44)
|...|+.+|+||+|---|.-+.|
T Consensus 49 iqr~l~~ice~hpdecevq~knr 71 (118)
T 2cmx_A 49 IQRALKAICERHPDECEVQYKNR 71 (118)
T ss_dssp HHHHHHHHHHHCTTTEEEEECSS
T ss_pred HHHHHHHHHHCCCCHHHEEECCH
T ss_conf 99999999853973652100231
No 7
>2yvc_D Neprilysin; protein-peptide complex, cell adhesion; 3.20A {Mus musculus}
Probab=4.08 E-value=1.8e+02 Score=12.29 Aligned_cols=13 Identities=31% Similarity=0.371 Sum_probs=8.3
Q ss_pred EEEECCCCCHHHC
Q ss_conf 9998779752320
Q 537021.9.peg.4 30 RIVNKLNPRFKVR 42 (44)
Q Consensus 30 yVick~nPrhK~R 42 (44)
--||-..|+-|||
T Consensus 10 tdinapkpkkkqr 22 (26)
T 2yvc_D 10 TDINAPKPKKKQR 22 (26)
T ss_pred CCCCCCCCCHHCC
T ss_conf 0156888410001
No 8
>3lw5_F Photosystem I reaction center subunit III, chloro; photosynthesis, electron transfer, membrane proteins, large, complexes, chromophore; HET: CL1 PQN BCR LMU LMG; 3.30A {Spinacia oleracea} PDB: 2o01_F*
Probab=3.92 E-value=1.4e+02 Score=12.91 Aligned_cols=10 Identities=30% Similarity=0.335 Sum_probs=5.4
Q ss_pred ECCCCCHHHC
Q ss_conf 8779752320
Q 537021.9.peg.4 33 NKLNPRFKVR 42 (44)
Q Consensus 33 ck~nPrhK~R 42 (44)
|+.||.|.+|
T Consensus 8 C~es~aF~~r 17 (154)
T 3lw5_F 8 CKESKQFAKR 17 (154)
T ss_dssp SSSCHHHHHH
T ss_pred CCCCHHHHHH
T ss_conf 7569999999
No 9
>2z4d_A 26S proteasome regulatory subunit RPN13; PH domain, nuclear protein; NMR {Saccharomyces cerevisiae}
Probab=3.89 E-value=2.4e+02 Score=11.67 Aligned_cols=13 Identities=15% Similarity=0.130 Sum_probs=6.5
Q ss_pred EEEECCEEEEEEC
Q ss_conf 9998888999987
Q 537021.9.peg.4 22 VVRRKNVIRIVNK 34 (44)
Q Consensus 22 ~VrRkGrvyVick 34 (44)
-..|||.+|+...
T Consensus 21 Pd~rKG~i~l~~~ 33 (96)
T 2z4d_A 21 PIPVQGEIEIKPN 33 (96)
T ss_dssp ECSCCCBEEEEET
T ss_pred ECCCCCEEEEEEC
T ss_conf 6488819999989
No 10
>1jb0_F Photosystem 1 reaction centre subunit III; membrane protein, multiprotein-pigment complex, photosynthesis; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.16.1
Probab=3.88 E-value=1.2e+02 Score=13.26 Aligned_cols=10 Identities=40% Similarity=0.561 Sum_probs=0.0
Q ss_pred ECCCCCHHHC
Q ss_conf 8779752320
Q 537021.9.peg.4 33 NKLNPRFKVR 42 (44)
Q Consensus 33 ck~nPrhK~R 42 (44)
|+.||+|.+|
T Consensus 31 C~es~aF~~R 40 (164)
T 1jb0_F 31 CKDSPAFQKR 40 (164)
T ss_dssp GGGCHHHHHH
T ss_pred CCCCHHHHHH
T ss_conf 6469999999
Done!