Query 537021.9.peg.42_1
Match_columns 44
No_of_seqs 106 out of 118
Neff 2.6
Searched_HMMs 13730
Date Sun May 22 19:23:54 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_42.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2qam41 g.42.1.1 (4:1-38) Ribo 99.7 1.8E-20 1.3E-24 121.7 -4.8 38 4-44 1-38 (38)
2 d2zjr41 g.42.1.1 (4:1-37) Ribo 99.7 5.5E-19 4E-23 114.2 -1.7 37 4-44 1-37 (37)
3 d2vqca1 a.4.5.78 (A:4-73) F-11 7.5 80 0.0058 12.9 2.2 23 6-28 40-62 (70)
4 d1jb0f_ f.23.16.1 (F:) Subunit 6.2 32 0.0023 14.9 -1.2 13 31-43 6-18 (141)
5 d2b5id1 g.18.1.1 (D:1-64) Inte 6.2 56 0.0041 13.7 0.1 16 26-41 39-54 (64)
6 d2cs3a1 g.44.1.3 (A:8-87) Prot 5.1 73 0.0053 13.1 0.1 15 26-40 19-33 (80)
7 d3bwga1 a.4.5.6 (A:5-82) Trans 4.5 1.2E+02 0.009 11.9 3.1 31 5-38 38-68 (78)
8 d2hq4a1 d.342.1.1 (A:1-152) Hy 4.3 1.3E+02 0.0094 11.8 1.2 19 20-38 124-142 (152)
9 d1rkia1 d.308.1.2 (A:1-98) Hyp 3.3 1.6E+02 0.012 11.4 2.5 17 16-32 79-95 (98)
10 d1vqou1 g.39.1.6 (U:4-56) Ribo 2.9 1.6E+02 0.011 11.4 0.3 18 18-35 14-31 (53)
No 1
>d2qam41 g.42.1.1 (4:1-38) Ribosomal protein L36 {Escherichia coli [TaxId: 562]}
Probab=99.72 E-value=1.8e-20 Score=121.65 Aligned_cols=38 Identities=42% Similarity=0.681 Sum_probs=35.7
Q ss_pred EEEHHHHHHHHHCCCCCEEEEECCEEEEEECCCCCHHHCCC
Q ss_conf 97458899885016787099988889999877975232079
Q 537021.9.peg.4 4 VKVRNSLRVLKLRHRGNKVVRRKNVIRIVNKLNPRFKVRQG 44 (44)
Q Consensus 4 MKvr~Slk~lk~r~~~c~~VrRkGrvyVick~nPrhK~RQG 44 (44)
|||++|||+ +|+||++|+|+|++||||++|||||||||
T Consensus 1 MKVr~svKk---~C~~C~ivrR~Grv~ViCk~nPrHKQRQG 38 (38)
T d2qam41 1 MKVRASVKK---LCRNCKIVKRDGVIRVICSAEPKHKQRQG 38 (38)
T ss_dssp CCCCSCCCC---CSTTBCCCCBTTBCCCCBSSCGGGCCCCC
T ss_pred CCCCHHHHH---HCCCCEEEEECCEEEEEECCCCCCCCCCC
T ss_conf 950212230---07897199856889999189985001278
No 2
>d2zjr41 g.42.1.1 (4:1-37) Ribosomal protein L36 {Deinococcus radiodurans [TaxId: 1299]}
Probab=99.68 E-value=5.5e-19 Score=114.16 Aligned_cols=37 Identities=38% Similarity=0.532 Sum_probs=34.3
Q ss_pred EEEHHHHHHHHHCCCCCEEEEECCEEEEEECCCCCHHHCCC
Q ss_conf 97458899885016787099988889999877975232079
Q 537021.9.peg.4 4 VKVRNSLRVLKLRHRGNKVVRRKNVIRIVNKLNPRFKVRQG 44 (44)
Q Consensus 4 MKvr~Slk~lk~r~~~c~~VrRkGrvyVick~nPrhK~RQG 44 (44)
|||++|+|++| .+|++|||+|++|||| +|||||||||
T Consensus 1 MKVr~SvKk~C---~~C~virR~g~v~ViC-~npkHKQRQG 37 (37)
T d2zjr41 1 MKVRSSVKKMC---DNCKVVRRHGRVLVIC-SNVKHKQRQG 37 (37)
T ss_dssp CEECSSCCCCS---TTCCCEECSSCEEECC-SSSTTCEECC
T ss_pred CCCCHHHHHHC---CCCEEEEECCEEEEEE-CCCCCCCCCC
T ss_conf 96123435326---6860998678899992-9997433479
No 3
>d2vqca1 a.4.5.78 (A:4-73) F-112 {Sulfolobus virus-like particle SSV1 [TaxId: 244589]}
Probab=7.50 E-value=80 Score=12.88 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=17.0
Q ss_pred EHHHHHHHHHCCCCCEEEEECCE
Q ss_conf 45889988501678709998888
Q 537021.9.peg.4 6 VRNSLRVLKLRHRGNKVVRRKNV 28 (44)
Q Consensus 6 vr~Slk~lk~r~~~c~~VrRkGr 28 (44)
|...|+.+|++|.|---|.-+.|
T Consensus 40 iqr~l~~ice~hpdecevq~knr 62 (70)
T d2vqca1 40 IQRALKAICERHPDECEVQYKNR 62 (70)
T ss_dssp HHHHHHHHHHHCTTTEEEEECSS
T ss_pred HHHHHHHHHHCCCCHHHEEECCC
T ss_conf 99999999853973652112341
No 4
>d1jb0f_ f.23.16.1 (F:) Subunit III of photosystem I reaction centre, PsaF {Synechococcus elongatus [TaxId: 32046]}
Probab=6.16 E-value=32 Score=14.87 Aligned_cols=13 Identities=31% Similarity=0.460 Sum_probs=9.1
Q ss_pred EEECCCCCHHHCC
Q ss_conf 9987797523207
Q 537021.9.peg.4 31 IVNKLNPRFKVRQ 43 (44)
Q Consensus 31 Vick~nPrhK~RQ 43 (44)
+-|+.||+|.+|+
T Consensus 6 tpC~es~~F~~R~ 18 (141)
T d1jb0f_ 6 VPCKDSPAFQKRA 18 (141)
T ss_dssp EEGGGCHHHHHHH
T ss_pred CCCCCCHHHHHHH
T ss_conf 4275699999999
No 5
>d2b5id1 g.18.1.1 (D:1-64) Interleukin-2 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.15 E-value=56 Score=13.66 Aligned_cols=16 Identities=6% Similarity=0.038 Sum_probs=12.7
Q ss_pred CCEEEEEECCCCCHHH
Q ss_conf 8889999877975232
Q 537021.9.peg.4 26 KNVIRIVNKLNPRFKV 41 (44)
Q Consensus 26 kGrvyVick~nPrhK~ 41 (44)
.|-+|.+|.-|+.|-.
T Consensus 39 ~gs~~M~C~GnsSHss 54 (64)
T d2b5id1 39 SGSLYMLCTGNSSHSS 54 (64)
T ss_dssp TCCSEEEBC-----CC
T ss_pred CCCEEEEECCCCCCCH
T ss_conf 7870799768987742
No 6
>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.09 E-value=73 Score=13.09 Aligned_cols=15 Identities=13% Similarity=0.078 Sum_probs=11.3
Q ss_pred CCEEEEEECCCCCHH
Q ss_conf 888999987797523
Q 537021.9.peg.4 26 KNVIRIVNKLNPRFK 40 (44)
Q Consensus 26 kGrvyVick~nPrhK 40 (44)
.+.-||.|.++|-||
T Consensus 19 EdtHFVQCPsv~~Hk 33 (80)
T d2cs3a1 19 EDTHFVQCPSVPSHK 33 (80)
T ss_dssp SSTTSEECSSCSSCE
T ss_pred CCCCEEECCCCCCCC
T ss_conf 377367578876771
No 7
>d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]}
Probab=4.49 E-value=1.2e+02 Score=11.92 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=23.4
Q ss_pred EEHHHHHHHHHCCCCCEEEEECCEEEEEECCCCC
Q ss_conf 7458899885016787099988889999877975
Q 537021.9.peg.4 5 KVRNSLRVLKLRHRGNKVVRRKNVIRIVNKLNPR 38 (44)
Q Consensus 5 Kvr~Slk~lk~r~~~c~~VrRkGrvyVick~nPr 38 (44)
-|+.++..|.. +-.+.++.|+-+.+...++.
T Consensus 38 tvr~Al~~L~~---~Gli~~~~g~G~~V~~~~~~ 68 (78)
T d3bwga1 38 TITKSLELLEQ---KGAIFQVRGSGIFVRKHKRK 68 (78)
T ss_dssp HHHHHHHHHHH---TTSEEEETTTEEEECCCCCC
T ss_pred HHHHHHHHHHH---CCCEEEECCCEEEECCCCHH
T ss_conf 99999999998---89389971857898359878
No 8
>d2hq4a1 d.342.1.1 (A:1-152) Hypothetical protein PH1570 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=4.27 E-value=1.3e+02 Score=11.83 Aligned_cols=19 Identities=16% Similarity=0.111 Sum_probs=13.9
Q ss_pred CEEEEECCEEEEEECCCCC
Q ss_conf 7099988889999877975
Q 537021.9.peg.4 20 NKVVRRKNVIRIVNKLNPR 38 (44)
Q Consensus 20 c~~VrRkGrvyVick~nPr 38 (44)
+.+.--+||++|.||-.-+
T Consensus 124 nFiLD~rg~LfiFnKPs~~ 142 (152)
T d2hq4a1 124 YFILDPRGRLFIFNKPSIA 142 (152)
T ss_dssp SEEECTTSEEEEESSTTHH
T ss_pred CEEECCCCEEEEECCCCHH
T ss_conf 0367788639997595388
No 9
>d1rkia1 d.308.1.2 (A:1-98) Hypothetical protein PAE0736 {Pyrobaculum aerophilum [TaxId: 13773]}
Probab=3.30 E-value=1.6e+02 Score=11.37 Aligned_cols=17 Identities=12% Similarity=-0.035 Sum_probs=11.6
Q ss_pred CCCCCEEEEECCEEEEE
Q ss_conf 16787099988889999
Q 537021.9.peg.4 16 RHRGNKVVRRKNVIRIV 32 (44)
Q Consensus 16 r~~~c~~VrRkGrvyVi 32 (44)
-|.+|.+|.-.|+-||-
T Consensus 79 sC~~C~vv~iG~~YFvr 95 (98)
T d1rkia1 79 NCDKCLIVEIGGVYFVR 95 (98)
T ss_dssp CCSSEEEEEETTEEEEE
T ss_pred CCCCEEEEEECCEEEEE
T ss_conf 98842899987899999
No 10
>d1vqou1 g.39.1.6 (U:4-56) Ribosomal protein L24e {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=2.88 E-value=1.6e+02 Score=11.42 Aligned_cols=18 Identities=11% Similarity=0.124 Sum_probs=0.0
Q ss_pred CCCEEEEECCEEEEEECC
Q ss_conf 787099988889999877
Q 537021.9.peg.4 18 RGNKVVRRKNVIRIVNKL 35 (44)
Q Consensus 18 ~~c~~VrRkGrvyVick~ 35 (44)
.+-.+||..|.+|-.|.+
T Consensus 14 ~G~~~Vr~Dg~v~~F~ss 31 (53)
T d1vqou1 14 TGTMFVHKDGATTHFCSS 31 (53)
T ss_dssp CCEEEECTTSCEEEESCH
T ss_pred CCEEEEECCCCEEEEECH
T ss_conf 788999628979998677
Done!