Query 537021.9.peg.423_1 Match_columns 37 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Tue May 24 23:01:25 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_423.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1n93_X P40 nucleoprotein; RNA 30.4 22 0.00094 15.8 2.1 14 23-36 138-152 (375) 2 3ee7_A Replicase polyprotein 1 7.4 8.3 0.00035 17.9 -4.8 14 16-29 87-100 (121) 3 3fxh_A Integron gene cassette 7.3 1.2E+02 0.0051 12.1 2.1 15 22-36 117-131 (135) 4 2j97_A Replicase polyprotein 1 6.5 9.9 0.00042 17.6 -4.8 13 16-28 83-95 (109) 5 2ovc_A Potassium voltage-gated 6.1 1.4E+02 0.0059 11.7 1.8 16 22-37 18-33 (33) 6 2nml_A Enhancer of rudimentary 6.1 1.4E+02 0.0059 11.7 0.9 12 25-36 24-35 (104) 7 1uw7_A NSP9; viral protein, re 4.4 23 0.00095 15.7 -4.1 14 16-29 117-130 (143) 8 3cqx_C BAG family molecular ch 3.4 2.3E+02 0.0096 10.7 2.0 13 22-34 8-20 (88) 9 2g9l_A Gaegurin-4, GGN4; amphi 3.1 1.6E+02 0.0069 11.4 -0.6 9 21-29 23-31 (37) 10 1oo0_A MAGO nashi protein; RNA 3.1 2.5E+02 0.01 10.5 1.6 9 15-23 122-130 (147) No 1 >1n93_X P40 nucleoprotein; RNA virus nucleoprotein tetramer, viral protein; 1.76A {Borna disease virus} SCOP: a.206.1.1 PDB: 1pp1_X* Probab=30.37 E-value=22 Score=15.77 Aligned_cols=14 Identities=50% Similarity=0.954 Sum_probs=10.5 Q ss_pred HHHH-HHHHHHHHHH Q ss_conf 9869-8999999841 Q 537021.9.peg.4 23 LLSI-NTCIDLLIGI 36 (37) Q Consensus 23 llsi-ntcidlligi 36 (37) +.|| +.|-|||||| T Consensus 138 ~sSil~hCCdLLIGi 152 (375) T 1n93_X 138 ISSIFSHCCSLLIGV 152 (375) T ss_dssp HHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHH T ss_conf 999999988888754 No 2 >3ee7_A Replicase polyprotein 1A; GXXXG, dimerization, SARS-COV, helix-helix, cytoplasm, hydrolase, membrane, metal-binding, protease; 2.60A {Sars coronavirus} PDB: 1qz8_A Probab=7.43 E-value=8.3 Score=17.94 Aligned_cols=14 Identities=43% Similarity=0.985 Sum_probs=10.0 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999999869899 Q 537021.9.peg.4 16 FLYFVQGLLSINTC 29 (37) Q Consensus 16 flyfvqgllsintc 29 (37) +||||+++-+++.- T Consensus 87 YLYFVKNln~L~RG 100 (121) T 3ee7_A 87 YLYFIKGLNNLNRG 100 (121) T ss_dssp EEEEBTTCCHHHHH T ss_pred EEEEECCCCCCCCC T ss_conf 99995175410010 No 3 >3fxh_A Integron gene cassette protein HFX_CASS2; integron cassette protein, mobIle metagenome, structural genomics, PSI-2; 1.84A {Uncultured bacterium} Probab=7.28 E-value=1.2e+02 Score=12.08 Aligned_cols=15 Identities=47% Similarity=0.744 Sum_probs=10.9 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 998698999999841 Q 537021.9.peg.4 22 GLLSINTCIDLLIGI 36 (37) Q Consensus 22 gllsintcidlligi 36 (37) -||.||.|...|-.| T Consensus 117 lllainiclailrei 131 (135) T 3fxh_A 117 LLLAINICLAILREI 131 (135) T ss_dssp HHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHH T ss_conf 999999999999986 No 4 >2j97_A Replicase polyprotein 1AB; SSB, zinc, HCOV, membrane, helicase, SARS COV, viral replicase, RNA replication, ATP-binding; 1.75A {Human coronavirus 229E} PDB: 2j98_A 2j98_B Probab=6.50 E-value=9.9 Score=17.56 Aligned_cols=13 Identities=38% Similarity=0.871 Sum_probs=9.2 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999986989 Q 537021.9.peg.4 16 FLYFVQGLLSINT 28 (37) Q Consensus 16 flyfvqgllsint 28 (37) +||||+++-+++. T Consensus 83 YLYFvKnln~L~R 95 (109) T 2j97_A 83 YLYFVKNLNNLRR 95 (109) T ss_dssp EEEEBTTCCHHHH T ss_pred EEEEECCCCHHCC T ss_conf 9998616330100 No 5 >2ovc_A Potassium voltage-gated channel subfamily KQT member 4; potassium channel, ION channel assembly, coiled-coil, tetramer, transport protein; 2.07A {Homo sapiens} Probab=6.11 E-value=1.4e+02 Score=11.74 Aligned_cols=16 Identities=38% Similarity=0.713 Sum_probs=12.7 Q ss_pred HHHHHHHHHHHHHHHC Q ss_conf 9986989999998419 Q 537021.9.peg.4 22 GLLSINTCIDLLIGIF 37 (37) Q Consensus 22 gllsintcidlligif 37 (37) ..-||..-.|+|.+|+ T Consensus 18 qvqsie~kld~ll~~y 33 (33) T 2ovc_A 18 QVQSIEHKLDLLLGFY 33 (33) T ss_dssp HHHHHHHHHHHHHTCC T ss_pred HHHHHHHHHHHHHCCC T ss_conf 9997999998886049 No 6 >2nml_A Enhancer of rudimentary homolog; HEF2/ERH fold, pseudo beta barrel, interaction network, transcription, cell cycle; 1.55A {Homo sapiens} SCOP: d.330.1.1 PDB: 1w9g_A 1wwq_A 1wz7_A Probab=6.08 E-value=1.4e+02 Score=11.74 Aligned_cols=12 Identities=25% Similarity=0.650 Sum_probs=7.3 Q ss_pred HHHHHHHHHHHH Q ss_conf 698999999841 Q 537021.9.peg.4 25 SINTCIDLLIGI 36 (37) Q Consensus 25 sintcidlligi 36 (37) |+|.|+|-+.++ T Consensus 24 Sv~~cmegiC~i 35 (104) T 2nml_A 24 SVNECMEGVCKM 35 (104) T ss_dssp SHHHHHHHHHHH T ss_pred CHHHHHHHHHHH T ss_conf 799999999999 No 7 >1uw7_A NSP9; viral protein, replicase protein, RNA-binding; 2.8A {Sars coronavirus hku-39849} SCOP: b.140.1.1 Probab=4.40 E-value=23 Score=15.74 Aligned_cols=14 Identities=43% Similarity=0.985 Sum_probs=9.5 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999999869899 Q 537021.9.peg.4 16 FLYFVQGLLSINTC 29 (37) Q Consensus 16 flyfvqgllsintc 29 (37) +||||+++-+++.- T Consensus 117 YLYFVKNln~L~RG 130 (143) T 1uw7_A 117 YLYFIKGLNNLNRG 130 (143) T ss_dssp EEEEBTTCCHHHHH T ss_pred EEEEECCCCCCCCC T ss_conf 99995175400011 No 8 >3cqx_C BAG family molecular chaperone regulator 2; protein-protein complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; 2.30A {Mus musculus} PDB: 3d0t_A Probab=3.40 E-value=2.3e+02 Score=10.67 Aligned_cols=13 Identities=23% Similarity=0.291 Sum_probs=9.2 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9986989999998 Q 537021.9.peg.4 22 GLLSINTCIDLLI 34 (37) Q Consensus 22 gllsintcidlli 34 (37) .|-.+|..||-++ T Consensus 8 sL~~vn~lID~ii 20 (88) T 3cqx_C 8 SLKHATRIIDEVV 20 (88) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 9999999999999 No 9 >2g9l_A Gaegurin-4, GGN4; amphipathic helix, antibiotic; NMR {Synthetic} Probab=3.13 E-value=1.6e+02 Score=11.40 Aligned_cols=9 Identities=56% Similarity=1.018 Sum_probs=0.0 Q ss_pred HHHHHHHHH Q ss_conf 999869899 Q 537021.9.peg.4 21 QGLLSINTC 29 (37) Q Consensus 21 qgllsintc 29 (37) ||.||.-.| T Consensus 23 qgvlst~sc 31 (37) T 2g9l_A 23 QGVLSTVSC 31 (37) T ss_dssp SSSHHHHHH T ss_pred HHHHHHHHH T ss_conf 615877555 No 10 >1oo0_A MAGO nashi protein; RNA recognition motif, splicing, protein complex, EXON junction complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.232.1.1 PDB: 1rk8_B 2x1g_B 1hl6_B 2j0s_C* 2j0q_C* 2hyi_A* 2xb2_C* 3ex7_A* 1p27_A Probab=3.06 E-value=2.5e+02 Score=10.48 Aligned_cols=9 Identities=56% Similarity=0.958 Sum_probs=0.0 Q ss_pred HHHHHHHHH Q ss_conf 999999999 Q 537021.9.peg.4 15 IFLYFVQGL 23 (37) Q Consensus 15 iflyfvqgl 23 (37) +|-|+||.| T Consensus 122 ~FYylvqDl 130 (147) T 1oo0_A 122 CFYYLVQDL 130 (147) T ss_dssp HHHHHHHHH T ss_pred HHHHHHHHH T ss_conf 799999889 Done!