RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.423_1
         (37 letters)



>gnl|CDD|152562 pfam12127, YdfA_immunity, SigmaW regulon antibacterial.  This
          protein is found in bacteria. Proteins in this family
          are about 330 amino acids in length. The operon from
          which this protein is derived confers immunity for the
          host species to a broad range of antibacterial
          compounds, unlike the specific immunity proteins that
          are linked to and co-regulated with their
          antibiotic-synthesis proteins.
          Length = 321

 Score = 25.0 bits (55), Expect = 5.1
 Identities = 7/27 (25%), Positives = 11/27 (40%)

Query: 1  LFLFLFLFFFDFVLIFLYFVQGLLSIN 27
            L +      F+ +F  FV   L I+
Sbjct: 5  GILVIAALILIFLAVFFSFVPVGLWIS 31


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.357    0.175    0.559 

Gapped
Lambda     K      H
   0.267   0.0744    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 612,596
Number of extensions: 22842
Number of successful extensions: 498
Number of sequences better than 10.0: 1
Number of HSP's gapped: 487
Number of HSP's successfully gapped: 38
Length of query: 37
Length of database: 5,994,473
Length adjustment: 11
Effective length of query: 26
Effective length of database: 5,756,785
Effective search space: 149676410
Effective search space used: 149676410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 50 (23.0 bits)