RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= 537021.9.peg.423_1 (37 letters) >gnl|CDD|152562 pfam12127, YdfA_immunity, SigmaW regulon antibacterial. This protein is found in bacteria. Proteins in this family are about 330 amino acids in length. The operon from which this protein is derived confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins. Length = 321 Score = 25.0 bits (55), Expect = 5.1 Identities = 7/27 (25%), Positives = 11/27 (40%) Query: 1 LFLFLFLFFFDFVLIFLYFVQGLLSIN 27 L + F+ +F FV L I+ Sbjct: 5 GILVIAALILIFLAVFFSFVPVGLWIS 31 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.357 0.175 0.559 Gapped Lambda K H 0.267 0.0744 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 612,596 Number of extensions: 22842 Number of successful extensions: 498 Number of sequences better than 10.0: 1 Number of HSP's gapped: 487 Number of HSP's successfully gapped: 38 Length of query: 37 Length of database: 5,994,473 Length adjustment: 11 Effective length of query: 26 Effective length of database: 5,756,785 Effective search space: 149676410 Effective search space used: 149676410 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 37 (21.6 bits) S2: 50 (23.0 bits)