BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.423_1
         (37 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.423_1 
          Length = 37

 Score = 64.3 bits (155), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/37 (100%), Positives = 37/37 (100%)

Query: 1  LFLFLFLFFFDFVLIFLYFVQGLLSINTCIDLLIGIF 37
          LFLFLFLFFFDFVLIFLYFVQGLLSINTCIDLLIGIF
Sbjct: 1  LFLFLFLFFFDFVLIFLYFVQGLLSINTCIDLLIGIF 37


>gi|254780861|ref|YP_003065274.1| NADH dehydrogenase subunit I [Candidatus Liberibacter asiaticus
          str. psy62]
          Length = 163

 Score = 21.6 bits (44), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query: 2  FLFLFLFFFDFVLIFLYFVQGLLSIN 27
          FLFL  F   F L   YF +   +IN
Sbjct: 10 FLFLKEFVGAFFLCLRYFFKAKTTIN 35


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.357    0.175    0.559 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,543
Number of Sequences: 1233
Number of extensions: 664
Number of successful extensions: 12
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 6
length of query: 37
length of database: 328,796
effective HSP length: 11
effective length of query: 26
effective length of database: 315,233
effective search space:  8196058
effective search space used:  8196058
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 31 (16.5 bits)