Query         537021.9.peg.455_1
Match_columns 37
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Tue May 24 20:15:34 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_455.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2ayu_A Nucleosome assembly pr  32.0      13 0.00037   18.8   0.3   12   11-22     42-53  (55)
  2 >3do9_A UPF0302 protein BA_154  25.1      60  0.0018   15.5   2.7   32    6-37     14-46  (127)
  3 >2z3y_A Lysine-specific histon  21.5      57  0.0017   15.6   2.0   24   14-37      3-26  (150)
  4 >3ct5_A Morphogenesis protein    8.9 1.7E+02   0.005   13.2   2.6   28    4-31     17-46  (105)
  5 >3c1y_A DNA integrity scanning   6.7   2E+02   0.006   12.9   1.2   12   21-32     70-81  (137)
  6 >2k1k_A Ephrin type-A receptor   5.5 2.6E+02  0.0077   12.3   2.0   14    4-17     24-37  (38)
  7 >2i39_A Protein N1, N1L protei   5.1 2.7E+02  0.0081   12.2   1.9   27    4-30     22-49  (137)
  8 >1cii_A Colicin IA; bacterioci   4.4 3.1E+02  0.0092   11.9   1.5   16   11-26    183-198 (206)
  9 >3kus_A Polyadenylate-binding    4.3 3.2E+02  0.0095   11.9   3.0   22    9-30     28-49  (88)
 10 >3e56_A Putative uncharacteriz   4.2 1.4E+02  0.0041   13.7  -1.0   10   28-37     48-57  (92)

No 1  
>>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} (A:89-143)
Probab=32.01  E-value=13  Score=18.83  Aligned_cols=12  Identities=42%  Similarity=0.728  Sum_probs=10.2

Q ss_pred             HHHHHHCCHHHH
Q ss_conf             999752241789
Q 537021.9.peg.4   11 FLFEKRKGIICG   22 (37)
Q Consensus        11 flfekrkgiicg   22 (37)
                      -+|+||+.||.|
T Consensus        42 Ply~kR~eIV~G   53 (55)
T 2ayu_A           42 PIWEQRSRIISG   53 (55)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCC
T ss_conf             699999999768


No 2  
>>3do9_A UPF0302 protein BA_1542/GBAA1542/BAS1430; uncharacterized protein, structural genomics, protein structure initiative, PSI; 2.75A {Bacillus anthracis} (A:1-127)
Probab=25.06  E-value=60  Score=15.47  Aligned_cols=32  Identities=22%  Similarity=0.401  Sum_probs=25.2

Q ss_pred             HHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             999999997-52241789999999846776369
Q 537021.9.peg.4    6 IIIVYFLFE-KRKGIICGRLLNMLLEEKSFLSN   37 (37)
Q Consensus         6 iiivyflfe-krkgiicgrllnmlleeksflsn   37 (37)
                      --|.|||+. .-|.-+|-++||.++....+|.+
T Consensus        14 ~Fi~wfL~~y~lK~re~~wiLnyl~~~~~lL~~   46 (127)
T 3do9_A           14 DFVKWFLNNYQLKQRECVWILNYLMSHDQLMHK   46 (127)
T ss_dssp             HHHHHHHHHCCBSSTHHHHHHHHHHHCTTTTTT
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHH
T ss_conf             999999985554320599999999719998866


No 3  
>>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} (A:198-347)
Probab=21.53  E-value=57  Score=15.60  Aligned_cols=24  Identities=38%  Similarity=0.481  Sum_probs=19.4

Q ss_pred             HHHCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             752241789999999846776369
Q 537021.9.peg.4   14 EKRKGIICGRLLNMLLEEKSFLSN   37 (37)
Q Consensus        14 ekrkgiicgrllnmlleeksflsn   37 (37)
                      .|+|.-..-|-.|-|||..|+||+
T Consensus         3 pK~KDemVErEFNRLLEatSYLSH   26 (150)
T 2z3y_A            3 PKEKDEMVEQEFNRLLEATSYLSH   26 (150)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             612456788888876654443200


No 4  
>>3ct5_A Morphogenesis protein 1; cell WALL, hydrolase, infection, structure, late protein; HET: NAG; 1.37A {Bacteriophage phi-29} PDB: 3csz_A* 3csr_A* 3ct0_A* 3ct1_A* (A:1-54,A:109-159)
Probab=8.95  E-value=1.7e+02  Score=13.24  Aligned_cols=28  Identities=39%  Similarity=0.452  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHH--HCCHHHHHHHHHHHHH
Q ss_conf             999999999975--2241789999999846
Q 537021.9.peg.4    4 LAIIIVYFLFEK--RKGIICGRLLNMLLEE   31 (37)
Q Consensus         4 laiiivyflfek--rkgiicgrllnmllee   31 (37)
                      -|--|.-+|-.|  .+.-|||-|-||--|.
T Consensus        17 nAqyIl~YL~~kGwT~nAICGmLGNmq~ES   46 (105)
T 3ct5_A           17 NAQYILNYLSSNGWTKQAICGMLGNMQSES   46 (105)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf             799999999986999999999999887450


No 5  
>>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A* (A:167-303)
Probab=6.68  E-value=2e+02  Score=12.86  Aligned_cols=12  Identities=50%  Similarity=0.556  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             899999998467
Q 537021.9.peg.4   21 CGRLLNMLLEEK   32 (37)
Q Consensus        21 cgrllnmlleek   32 (37)
                      -|||+.|-++|-
T Consensus        70 eGRLi~lQleEL   81 (137)
T 3c1y_A           70 EGRLARMQLREL   81 (137)
T ss_dssp             GGHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
T ss_conf             140099999999


No 6  
>>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A (A:)
Probab=5.46  E-value=2.6e+02  Score=12.31  Aligned_cols=14  Identities=21%  Similarity=0.579  Sum_probs=7.4

Q ss_pred             HHHHHHHHHHHHHC
Q ss_conf             99999999997522
Q 537021.9.peg.4    4 LAIIIVYFLFEKRK   17 (37)
Q Consensus         4 laiiivyflfekrk   17 (37)
                      +|.+.-.|.|.+|+
T Consensus        24 ~alllg~~~fr~rr   37 (38)
T 2k1k_A           24 AALLLGILVFRSRR   37 (38)
T ss_dssp             HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHEECCC
T ss_conf             99999888410125


No 7  
>>2i39_A Protein N1, N1L protein; all alpha, viral protein; 2.20A {Vaccinia virus} PDB: 2uxe_A (A:)
Probab=5.13  E-value=2.7e+02  Score=12.19  Aligned_cols=27  Identities=15%  Similarity=0.279  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHH-CCHHHHHHHHHHHH
Q ss_conf             9999999999752-24178999999984
Q 537021.9.peg.4    4 LAIIIVYFLFEKR-KGIICGRLLNMLLE   30 (37)
Q Consensus         4 laiiivyflfekr-kgiicgrllnmlle   30 (37)
                      -.||..||.+.+- ..+.|||+.+-|+.
T Consensus        22 ~~Ii~~Yi~wRg~~~~~~~GriFKeL~k   49 (137)
T 2i39_A           22 RTLLIRYILWRNDNDQTYYNDDFKKLML   49 (137)
T ss_dssp             HHHHHHHHHHHHHCCCSSCCHHHHHHHG
T ss_pred             HHHHHHHHEECCCCCCCHHHHHHHHHHH
T ss_conf             9999999502389986558999999999


No 8  
>>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} (A:1-206)
Probab=4.42  E-value=3.1e+02  Score=11.92  Aligned_cols=16  Identities=44%  Similarity=0.642  Sum_probs=11.1

Q ss_pred             HHHHHHCCHHHHHHHH
Q ss_conf             9997522417899999
Q 537021.9.peg.4   11 FLFEKRKGIICGRLLN   26 (37)
Q Consensus        11 flfekrkgiicgrlln   26 (37)
                      --+|.||||.-.||-.
T Consensus       183 a~yerrkgi~~trlse  198 (206)
T 1cii_A          183 AEYERRKGILDTRLSE  198 (206)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             9888888899988888


No 9  
>>3kus_A Polyadenylate-binding protein 1; protein-protein complex, acetylation, alternative splicing, cytoplasm, methylation, mRNA processing, mRNA splicing, nucleus; HET: EPE; 1.40A {Homo sapiens} PDB: 3kut_A 3kur_A 2x04_A (A:)
Probab=4.25  E-value=3.2e+02  Score=11.85  Aligned_cols=22  Identities=27%  Similarity=0.554  Sum_probs=0.0

Q ss_pred             HHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             9999975224178999999984
Q 537021.9.peg.4    9 VYFLFEKRKGIICGRLLNMLLE   30 (37)
Q Consensus         9 vyflfekrkgiicgrllnmlle   30 (37)
                      .|-+.+...--.+|+.-.||||
T Consensus        28 Ly~~V~~~~p~~A~KITGMLLE   49 (88)
T 3kus_A           28 LFPLIQAMHPTLAGKITGMLLE   49 (88)
T ss_dssp             HHHHHHHHCGGGHHHHHHHHHT
T ss_pred             HHHHHHHHCHHHCCCHHHHHHC
T ss_conf             7899998780110324575525


No 10 
>>3e56_A Putative uncharacterized protein; alpha-beta sandwich, interlocked homodimer, ASR1734, unknown function; 2.01A {Nostoc punctiforme pcc 73102} (A:1-92)
Probab=4.21  E-value=1.4e+02  Score=13.69  Aligned_cols=10  Identities=70%  Similarity=0.992  Sum_probs=0.0

Q ss_pred             HHHHHHHHCC
Q ss_conf             9846776369
Q 537021.9.peg.4   28 LLEEKSFLSN   37 (37)
Q Consensus        28 lleeksflsn   37 (37)
                      |.||||.|+.
T Consensus        48 lieeksll~d   57 (92)
T 3e56_A           48 LIEEKSLLSD   57 (92)
T ss_dssp             ECCCGGGSSC
T ss_pred             EEHHHHHCCC
T ss_conf             3015531056


Done!