HHsearch alignment for GI: peg_472 and conserved domain: COG0468
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair].
Probab=94.89 E-value=0.15 Score=31.52 Aligned_cols=87 Identities=18% Similarity=0.197 Sum_probs=39.8
Q ss_pred HCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCC-CCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 10787988889999999996146877788665878999779999779-87782224-53322334555665554456542
Q 537021.9.peg.4 26 LSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRG-NHVDVVEL-DAASHTSIDDVREIIDQIYYKPI 103 (369)
Q Consensus 26 f~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~-~~~d~~e~-~~~s~~~id~ir~l~~~~~~~p~ 103 (369)
T Consensus 65 iyG~~gsGKT~lal~~~--~~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~---~~~e~q~~i~~~~~~~~~ 139 (279)
T COG0468 65 IYGPESSGKTTLALQLV--ANAQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQP---DTGEQQLEIAEKLARSGA 139 (279)
T ss_pred EECCCCCCHHHHHHHHH--HHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEECC---CCHHHHHHHHHHHHHHCC
T ss_conf 84688765466899998--8865379808999589998999999988754215368668---977999999999987546
Q ss_pred CCCCCEEEEECHHHC
Q ss_conf 046523775115664
Q 537021.9.peg.4 104 SARFRVYIMDEVQML 118 (369)
Q Consensus 104 ~~~~kv~iid~a~~m 118 (369)
T Consensus 140 ~-~i~LvVVDSvaa~ 153 (279)
T COG0468 140 E-KIDLLVVDSVAAL 153 (279)
T ss_pred C-CCCEEEEECCCCC
T ss_conf 8-8788998257434