HHsearch alignment for GI: peg_472 and conserved domain: COG1061
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].
Probab=95.32 E-value=0.063 Score=34.33 Aligned_cols=131 Identities=17% Similarity=0.206 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHC-----CCCC-CC
Q ss_conf 48999999999982876706201078798888999999999614687778866587899977999977-----9877-82
Q 537021.9.peg.4 4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIR-----GNHV-DV 77 (369)
Q Consensus 4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~-----~~~~-d~ 77 (369)
T Consensus 41 Q~~al~a~~~~~~~~~---~gvivlpTGaGKT~va~~~~~~~~~~-------~Lvlv~~~~L~~Qw~~~~~~~~~~~~~~ 110 (442)
T COG1061 41 QEEALDALVKNRRTER---RGVIVLPTGAGKTVVAAEAIAELKRS-------TLVLVPTKELLDQWAEALKKFLLLNDEI 110 (442)
T ss_pred HHHHHHHHHHHCCCCC---CEEEEECCCCCHHHHHHHHHHHHCCC-------EEEEECCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 9999999996222578---67999679998899999999982698-------8999782999999999999734886766
Q ss_pred CCCCCC------CCCCHHHHHHHHHHHHHHHHCC-CCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 224533------2233455566555445654204-65237751156648001678999997212211146650675
Q 537021.9.peg.4 78 VELDAA------SHTSIDDVREIIDQIYYKPISA-RFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEI 146 (369)
Q Consensus 78 ~e~~~~------s~~~id~ir~l~~~~~~~p~~~-~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~ 146 (369)
T Consensus 111 g~~~~~~~~~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~~~--~LGLTATp~ 184 (442)
T COG1061 111 GIYGGGEKELEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAAYP--RLGLTATPE 184 (442)
T ss_pred CEECCCCCCCCCCCEEEEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCE--EEEEECCCC
T ss_conf 03368723357774899983897641555540356667599975245784779999997510310--467714872