HHsearch alignment for GI: peg_472 and conserved domain: COG1220
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones].
Probab=96.95 E-value=0.00095 Score=47.79 Aligned_cols=46 Identities=30% Similarity=0.512 Sum_probs=37.6
Q ss_pred CCCHHHHHHH----HHHHHHCCC---------CCEEEHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf 9284899999----999998287---------670620107879888899999999961
Q 537021.9.peg.4 1 MIGQKPMIKT----LTNAFKSGR---------IAQSYMLSGTRGIGKTTTARIIARSLN 46 (369)
Q Consensus 1 iiGq~~~~~~----l~~~~~~~~---------~~ha~lf~G~~G~GK~~~a~~~A~~l~ 46 (369)
T Consensus 17 IIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~ 75 (444)
T COG1220 17 IIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAG 75 (444)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 40717778899999998999975478776225755358888888768899999999848