HHsearch alignment for GI: peg_472 and conserved domain: COG1224
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription].
Probab=99.27 E-value=8.8e-11 Score=99.67 Aligned_cols=118 Identities=27% Similarity=0.360 Sum_probs=96.5
Q ss_pred CCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEEC------------CCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 52377511566480016789999972122111466506------------754330356754333210245400135678
Q 537021.9.peg.4 107 FRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATT------------EIRKIPITVLSRCQRFDLHRISIGDLIELF 174 (369)
Q Consensus 107 ~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~------------~~~~ll~TI~SRcq~~~f~~l~~~~i~~~L 174 (369)
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAlEse~aP-Iii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireIi 370 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRALESELAP-IIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREII 370 (450)
T ss_pred CCEEEEECHHHHHHHHHHHHHHHHHCCCCC-EEEEECCCCEEEECCCCCCCCCCCCHHHHHHEEEEECCCCCHHHHHHHH
T ss_conf 342897321345578999999876314675-7999717750012166776888898766622567744779889999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHCC-CCCCCHHHHCCCCC--CCH--HHCCCCHHHHH
Q ss_conf 76431013456256644565316-76420011000111--000--00012103220
Q 537021.9.peg.4 175 TKILQEESIEFDPEAVAMIARAS-DGSARDGLSLLDQA--IAR--CNDKIVTSSVR 225 (369)
Q Consensus 175 ~~i~~~E~i~~d~~~l~~ia~~s-~GslR~Al~lLeq~--i~~--~~~~i~~e~v~ 225 (369)
T Consensus 371 ~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe 426 (450)
T COG1224 371 RIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVE 426 (450)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHCCCEEEHHHHH
T ss_conf 97643540304888999997515034489999861688899987179746566799