HHsearch alignment for GI: peg_472 and conserved domain: COG1419
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion].
Probab=95.38 E-value=0.08 Score=33.59 Aligned_cols=121 Identities=19% Similarity=0.230 Sum_probs=64.2
Q ss_pred CEEEHHCCCCCCCHHHHHHHHH-HHH-CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC------------C
Q ss_conf 7062010787988889999999-996-1468777886658789997799997798778222453322------------3
Q 537021.9.peg.4 21 AQSYMLSGTRGIGKTTTARIIA-RSL-NYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAASH------------T 86 (369)
Q Consensus 21 ~ha~lf~G~~G~GK~~~a~~~A-~~l-~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~s~------------~ 86 (369)
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiIT------------------tDtYRIGA~EQLk~Ya~im~vp~~ 264 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIIT------------------TDTYRIGAVEQLKTYADIMGVPLE 264 (407)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE------------------ECCCHHHHHHHHHHHHHHHCCCEE
T ss_conf 85799989988758879999999997532576068997------------------144115289999999998699559
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHH-----CCCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 3455566555445654204652377511566480016789999972-----12211146650675433035675433321
Q 537021.9.peg.4 87 SIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEE-----PPPHVKFIFATTEIRKIPITVLSRCQRFD 161 (369)
Q Consensus 87 ~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEE-----Pp~~~~fil~t~~~~~ll~TI~SRcq~~~ 161 (369)
T Consensus 265 vv~~~~el~~ai~~---l~~~d~ILVDTaGrs~~D~~--~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~ 339 (407)
T COG1419 265 VVYSPKELAEAIEA---LRDCDVILVDTAGRSQYDKE--KIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFP 339 (407)
T ss_pred EECCHHHHHHHHHH---HHCCCEEEEECCCCCCCCHH--HHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCCC
T ss_conf 96399999999998---53188899968998833789--99999999703566217999845764688999999724588
Q ss_pred CCC
Q ss_conf 024
Q 537021.9.peg.4 162 LHR 164 (369)
Q Consensus 162 f~~ 164 (369)
T Consensus 340 i~~ 342 (407)
T COG1419 340 IDG 342 (407)
T ss_pred CCE
T ss_conf 661