HHsearch alignment for GI: peg_472 and conserved domain: COG1466
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair].
Probab=99.77 E-value=3.8e-16 Score=139.24 Aligned_cols=311 Identities=16% Similarity=0.183 Sum_probs=236.0
Q ss_pred HHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC-CCCCCH
Q ss_conf 9999998287670620107879888899999999961468777886658789997799997798778222453-322334
Q 537021.9.peg.4 10 TLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDA-ASHTSI 88 (369)
Q Consensus 10 ~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~-~s~~~i 88 (369)
T Consensus 5 ~~~~~l~~~~~~~v~ll~G~d~~l~~e~~~~i~~~~~-~------------------------~~~~~~~~~~~~~~~-- 57 (334)
T COG1466 5 ELAKHLKKKNLMPVYLLYGEDEGLLEEAADAILKRAL-A------------------------DGFDENYSFFDDSEL-- 57 (334)
T ss_pred HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH-H------------------------CCCCEEEEECCCCCC--
T ss_conf 8999861478751899966864689999999999734-3------------------------156613454365556--
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECHHHCC-CCHHHHHHHHHHHCC-CCCCEEEEECC---CCCCCHHHHHH--HHHHH
Q ss_conf 5556655544565420465237751156648-001678999997212-21114665067---54330356754--33321
Q 537021.9.peg.4 89 DDVREIIDQIYYKPISARFRVYIMDEVQMLS-TAAFNGLLKTLEEPP-PHVKFIFATTE---IRKIPITVLSR--CQRFD 161 (369)
Q Consensus 89 d~ir~l~~~~~~~p~~~~~kv~iid~a~~m~-~~a~NaLLK~lEEPp-~~~~fil~t~~---~~~ll~TI~SR--cq~~~ 161 (369)
T Consensus 58 -~~~~~~~~~~s~~lF~~~~~v~l~~~~~~~~~~~~~~l~~~~~~~p~~~~~l~~~~~kl~~~~~~~k~~~~~~~~~~~~ 136 (334)
T COG1466 58 -DWADLLSELESPSLFGEKRLVVLKNAEKKPNKDKNLALLELAALLPSTDLLLLVESNKLDKAKKLTKWLKKLAKAVVVE 136 (334)
T ss_pred -CHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEE
T ss_conf -8999998862768778885799877654566427899999853689786899996188752778789888744473466
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHC-CCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf 02454001356787643101345625664456531676420011000111000000-12103220001356777778888
Q 537021.9.peg.4 162 LHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCND-KIVTSSVRLMLALADRNRIMDLF 240 (369)
Q Consensus 162 f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~-~i~~e~v~~llg~~~~~~i~~Ll 240 (369)
T Consensus 137 ~~~~~~~~l~~~i~~~~~~~~l~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l~ 216 (334)
T COG1466 137 CKPLDEAELPQWIKKRAKELGLKIDQEAIQLLLEALGGNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLA 216 (334)
T ss_pred ECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHH
T ss_conf 25887788999999999991898899999999998588299999999999874789866799999997364557889999
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC-------CCCCCCHHHHHHHHHHHHHCCHHH
Q ss_conf 7630136334678876543047621357877753489999997457412-------234499889999999986299899
Q 537021.9.peg.4 241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMA-------DTLLYSEAENARALQYSKEVSITF 313 (369)
Q Consensus 241 ~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~-------~~~~~~~~e~~~i~~~a~~i~~~~ 313 (369)
T Consensus 217 dail~g~~~~a~~~l~~L~~~ge~p~~il~~l~~~f~~~~~l~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~r~s~~~ 296 (334)
T COG1466 217 DALLKGDVKKALRLLRDLLLEGEEPLKLLAALTRQFRLLLQLKALAEKGKSLQQAAKSLGIPYRRKKLFKKAARRLSLKQ 296 (334)
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCHHH
T ss_conf 99987898999999999997699889999999999999999999997364699999882892878899999998759999
Q ss_pred HHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHH
Q ss_conf 9999999999999830278-8899999999999533
Q 537021.9.peg.4 314 LSRFWQMILKGISEIEGFS-RPMEAVEMVLIRLAHA 348 (369)
Q Consensus 314 L~~~lq~l~~a~~~Lk~n~-np~L~lE~lLlkL~~~ 348 (369)
T Consensus 297 l~~~l~~l~~~d~~~K~~~~d~~~~l~~~l~~~~~~ 332 (334)
T COG1466 297 LLKALRLLAQLDYQIKTGYGDPVWALELFLLRLLEL 332 (334)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC
T ss_conf 999999999999998457766006899999998542