HHsearch alignment for GI: peg_472 and conserved domain: COG2255
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair].
Probab=99.57 E-value=6.2e-14 Score=122.93 Aligned_cols=175 Identities=29% Similarity=0.319 Sum_probs=131.6
Q ss_pred CCHHHHHHHHHHHHH-----CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC
Q ss_conf 284899999999998-----287670620107879888899999999961468777886658789997799997798778
Q 537021.9.peg.4 2 IGQKPMIKTLTNAFK-----SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVD 76 (369)
Q Consensus 2 iGq~~~~~~l~~~~~-----~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d 76 (369)
T Consensus 29 iGQ~~vk~~L~ifI~AAk~r~e~lDH-vLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le------------------ 89 (332)
T COG2255 29 IGQEKVKEQLQIFIKAAKKRGEALDH-VLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE------------------ 89 (332)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCCC------------------
T ss_conf 18399999999999999844987674-78647998768889999999856773763662015------------------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCC------------------CC
Q ss_conf 222453322334555665554456542046523775115664800167899999721221------------------11
Q 537021.9.peg.4 77 VVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPH------------------VK 138 (369)
Q Consensus 77 ~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~------------------~~ 138 (369)
T Consensus 90 ----------K~gDlaaiLt~--L----e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 90 ----------KPGDLAAILTN--L----EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred ----------CHHHHHHHHHC--C----CCCCEEEEEHHHHCCHHHHHHHHHHHHHEEEEEEECCCCCCCEEECCCCCEE
T ss_conf ----------72659999863--9----8677677725531474289896467531057789724875534763799813
Q ss_pred EEEEECCCCCCCHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCC
Q ss_conf 4665067543303567543-332102454001356787643101345625664456531676420011000111
Q 537021.9.peg.4 139 FIFATTEIRKIPITVLSRC-QRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQA 211 (369)
Q Consensus 139 fil~t~~~~~ll~TI~SRc-q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~ 211 (369)
T Consensus 154 LIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 154 LIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred EEEECCCCCCCCCHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 75101346645633688628604540588899999999888873877685799999986369938999999999