HHsearch alignment for GI: peg_472 and conserved domain: COG2874
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=93.98 E-value=0.45 Score=28.03 Aligned_cols=141 Identities=13% Similarity=0.105 Sum_probs=70.1
Q ss_pred CCCCEE--EHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH-HHHHHCCCCC----------CCCCCCCC-
Q ss_conf 876706--201078798888999999999614687778866587899977-9999779877----------82224533-
Q 537021.9.peg.4 18 GRIAQS--YMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEH-CQAIIRGNHV----------DVVELDAA- 83 (369)
Q Consensus 18 ~~~~ha--~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~-c~~i~~~~~~----------d~~e~~~~- 83 (369)
T Consensus 23 GGiP~GsL~lIEGd~~tGKSvLsqr~~YG~-L~~g~~v~yvs-Te~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~ 100 (235)
T COG2874 23 GGIPVGSLILIEGDNGTGKSVLSQRFAYGF-LMNGYRVTYVS-TELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEP 100 (235)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHH-HHCCCEEEEEE-ECHHHHHHHHHHHHCCCCCHHHHHCCEEEEEEECCCC
T ss_conf 997467699998889854889999999988-70895489998-4035999999888638871687750626899932454
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC-CCHHHHHHHHHHHC---CCCCCEEEEECCCCCCC----HHHHH
Q ss_conf 223345556655544565420465237751156648-00167899999721---22111466506754330----35675
Q 537021.9.peg.4 84 SHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS-TAAFNGLLKTLEEP---PPHVKFIFATTEIRKIP----ITVLS 155 (369)
Q Consensus 84 s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~-~~a~NaLLK~lEEP---p~~~~fil~t~~~~~ll----~TI~S 155 (369)
T Consensus 101 ~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilTvhp~~l~e~~~~rirs 180 (235)
T COG2874 101 VNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTVHPSALDEDVLTRIRS 180 (235)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHCCHHHHHHHHH
T ss_conf 22573778999999975577523778999534377652649999999999999872897899994734337899999987
Q ss_pred HHHHH
Q ss_conf 43332
Q 537021.9.peg.4 156 RCQRF 160 (369)
Q Consensus 156 Rcq~~ 160 (369)
T Consensus 181 ~~d~~ 185 (235)
T COG2874 181 ACDVY 185 (235)
T ss_pred HHHEE
T ss_conf 52025