HHsearch alignment for GI: peg_472 and conserved domain: COG3604
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms].
Probab=96.16 E-value=0.033 Score=36.45 Aligned_cols=203 Identities=20% Similarity=0.258 Sum_probs=106.8
Q ss_pred CCCHHHHHHHHHHHHH---CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCHHHHHHHC--CCC
Q ss_conf 9284899999999998---287670620107879888899999999961468777886658-7899977999977--987
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFK---SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVE-FEGFGEHCQAIIR--GNH 74 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~---~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~-~c~~c~~c~~i~~--~~~ 74 (369)
T Consensus 225 iIG~S~am~~ll~~i~~VA~Sd~t--VLi~GETGtGKElvAraIH~~----S~R~~kPfV~~NCAAlPes-LlESELFGH 297 (550)
T COG3604 225 IIGRSPAMRQLLKEIEVVAKSDST--VLIRGETGTGKELVARAIHQL----SPRRDKPFVKLNCAALPES-LLESELFGH 297 (550)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCE--EEEECCCCCCHHHHHHHHHHH----CCCCCCCCEEEECCCCCHH-HHHHHHHCC
T ss_conf 230699999999999987268980--798458885389999999873----7555798666312225378-888887453
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCC-----------CCCCEEEEE
Q ss_conf 782224533223345556655544565420465237751156648001678999997212-----------211146650
Q 537021.9.peg.4 75 VDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPP-----------PHVKFIFAT 143 (369)
Q Consensus 75 ~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp-----------~~~~fil~t 143 (369)
T Consensus 298 ----eK-GAF-TGA~~~r--~G--rFElAdG--GTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAA- 364 (550)
T COG3604 298 ----EK-GAF-TGAINTR--RG--RFELADG--GTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAA- 364 (550)
T ss_pred ----CC-CCC-CCCHHCC--CC--CEEECCC--CEEECHHHCCCCHHHHHHHHHHHHHCCEEECCCCCEEEEEEEEEEC-
T ss_conf ----32-233-3510146--76--3565579--7576022036787788999999863652534799636777899821-
Q ss_pred CCCC--------CCCHHHHHHHHHHHC--CCCCC--HHH----HHHHHHHHHHCC---CCCCHHHHHHHHHC-CCCCCCH
Q ss_conf 6754--------330356754333210--24540--013----567876431013---45625664456531-6764200
Q 537021.9.peg.4 144 TEIR--------KIPITVLSRCQRFDL--HRISI--GDL----IELFTKILQEES---IEFDPEAVAMIARA-SDGSARD 203 (369)
Q Consensus 144 ~~~~--------~ll~TI~SRcq~~~f--~~l~~--~~i----~~~L~~i~~~E~---i~~d~~~l~~ia~~-s~GslR~ 203 (369)
T Consensus 365 TNRDL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPGNVRE 444 (550)
T COG3604 365 TNRDLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYEWPGNVRE 444 (550)
T ss_pred CCHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCHHH
T ss_conf 35309999874951554532102001378983458866799999999999886397640339899999973999971999
Q ss_pred HHHCCCCCCCHHHCCCCHHH
Q ss_conf 11000111000000121032
Q 537021.9.peg.4 204 GLSLLDQAIARCNDKIVTSS 223 (369)
Q Consensus 204 Al~lLeq~i~~~~~~i~~e~ 223 (369)
T Consensus 445 Len~veRavlla~~~~~~~d 464 (550)
T COG3604 445 LENVVERAVLLAGRLTRRGD 464 (550)
T ss_pred HHHHHHHHHHHCCCCCCCCC
T ss_conf 99899999997047677765