HHsearch alignment for GI: peg_472 and conserved domain: COG4650
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms].
Probab=94.71 E-value=0.2 Score=30.66 Aligned_cols=111 Identities=23% Similarity=0.247 Sum_probs=53.8
Q ss_pred HHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCHHHHHHHC-CCCCCCCCCCCCCC
Q ss_conf 999999998287670620107879888899999999961468777886658-7899977999977-98778222453322
Q 537021.9.peg.4 8 IKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVE-FEGFGEHCQAIIR-GNHVDVVELDAASH 85 (369)
Q Consensus 8 ~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~-~c~~c~~c~~i~~-~~~~d~~e~~~~s~ 85 (369)
T Consensus 197 ieqierva~rsr~p--~ll~gptgagksflarriyelk~arh-q~sg~fvevncatlrgd~amsalfgh-----vkga-f 267 (531)
T COG4650 197 IEQIERVAIRSRAP--ILLNGPTGAGKSFLARRIYELKQARH-QFSGAFVEVNCATLRGDTAMSALFGH-----VKGA-F 267 (531)
T ss_pred HHHHHHHHHHCCCC--EEEECCCCCCHHHHHHHHHHHHHHHH-HCCCCEEEEEEEEECCCHHHHHHHHH-----HHCC-C
T ss_conf 99999998614697--68646887436689999999998887-53786278863000475288998764-----0013-1
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHC
Q ss_conf 334555665554456542046523775115664800167899999721
Q 537021.9.peg.4 86 TSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEP 133 (369)
Q Consensus 86 ~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEP 133 (369)
T Consensus 268 tga~~~r~gl----lrsadgg--mlfldeigelgadeqamllkaieek 309 (531)
T COG4650 268 TGARESREGL----LRSADGG--MLFLDEIGELGADEQAMLLKAIEEK 309 (531)
T ss_pred CCCHHHHHHH----HCCCCCC--EEEHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 4633455442----4337786--5756743324752788999998871