HHsearch alignment for GI: peg_472 and conserved domain: PRK05022
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional.
Probab=98.25 E-value=7.2e-06 Score=63.41 Aligned_cols=194 Identities=21% Similarity=0.255 Sum_probs=106.0
Q ss_pred CCCHHHHHHHHHHHHH---CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCHHHHHHHC--CCC
Q ss_conf 9284899999999998---28767062010787988889999999996146877788665-87899977999977--987
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFK---SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTV-EFEGFGEHCQAIIR--GNH 74 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~---~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~-~~c~~c~~c~~i~~--~~~ 74 (369)
T Consensus 188 lIG~S~~m~~l~~~i~~vA~sd~p--VLI~GEtGTGKelvAr~IH~~----S~R~~~Pfv~vNCaalpe-~l~EseLFGh 260 (510)
T PRK05022 188 MIGQSPAMQQLKKEIEVVAASDLN--VLITGETGVGKELVARAIHQA----SPRAVKPLVYLNCAALPE-SLAESELFGH 260 (510)
T ss_pred EEECCHHHHHHHHHHHHHHCCCCC--EEEECCCCCCHHHHHHHHHHC----CCCCCCCCEEEECCCCCH-HHHHHHHCCC
T ss_conf 520899999999999999689998--898898981399999999966----887899857888999985-6789986597
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHC-----------CCCCCEEEEE
Q ss_conf 78222453322334555665554456542046523775115664800167899999721-----------2211146650
Q 537021.9.peg.4 75 VDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEP-----------PPHVKFIFAT 143 (369)
Q Consensus 75 ~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEP-----------p~~~~fil~t 143 (369)
T Consensus 261 -----~kGaF-tGA~~~r~--G~fe----~A~gGTLfLDEI~~Lpl~~Q~KLLrvLq~g~iqrvG~~~~~~vdvRIIAAT 328 (510)
T PRK05022 261 -----VKGAF-TGAISNRS--GKFE----LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAAT 328 (510)
T ss_pred -----CCCCC-CCCCCCCC--CCEE----ECCCCEEEEECHHHCCHHHHHHHHHHHHCCEEEECCCCCEEEEEEEEEEEC
T ss_conf -----77886-88655678--8101----778987987574549999999999998479588558994666668999607
Q ss_pred CCCCCCCHHHHH---------H--HHHHHCCCCCC--HHHHH----HHHHHHHHCC---CCCCHHHHHHHHH-CCCCCCC
Q ss_conf 675433035675---------4--33321024540--01356----7876431013---4562566445653-1676420
Q 537021.9.peg.4 144 TEIRKIPITVLS---------R--CQRFDLHRISI--GDLIE----LFTKILQEES---IEFDPEAVAMIAR-ASDGSAR 202 (369)
Q Consensus 144 ~~~~~ll~TI~S---------R--cq~~~f~~l~~--~~i~~----~L~~i~~~E~---i~~d~~~l~~ia~-~s~GslR 202 (369)
T Consensus 329 nr--dL~~~V~~G~FR~DLYyRLsv~~I~vPPLRER~eDI~lLa~~FLe~~~~~~g~~~~~ls~eAl~~L~~Y~WPGNVR 406 (510)
T PRK05022 329 NR--DLREEVLAGRFRADLYHRLSVFPLPVPPLRERGDDVLLLAGYFLEQNRLRLGLSSLRLSPDAQAALLQYDWPGNVR 406 (510)
T ss_pred CC--CHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHH
T ss_conf 83--5999988396389999876204034808655554099999999999999829898988899999997099997899
Q ss_pred HHHHCCCCCCCHH
Q ss_conf 0110001110000
Q 537021.9.peg.4 203 DGLSLLDQAIARC 215 (369)
Q Consensus 203 ~Al~lLeq~i~~~ 215 (369)
T Consensus 407 ELenvIeRA~lla 419 (510)
T PRK05022 407 ELEHVISRAALLA 419 (510)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999971