HHsearch alignment for GI: peg_472 and conserved domain: PRK05201
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional.
Probab=98.93 E-value=4.6e-09 Score=86.96 Aligned_cols=90 Identities=22% Similarity=0.421 Sum_probs=57.3
Q ss_pred CEEEEECHHHCC------------CCHHHHHHHHHHHCC----------CCCCEEEE----ECCCCCCCHHHHHHHH-HH
Q ss_conf 237751156648------------001678999997212----------21114665----0675433035675433-32
Q 537021.9.peg.4 108 RVYIMDEVQMLS------------TAAFNGLLKTLEEPP----------PHVKFIFA----TTEIRKIPITVLSRCQ-RF 160 (369)
Q Consensus 108 kv~iid~a~~m~------------~~a~NaLLK~lEEPp----------~~~~fil~----t~~~~~ll~TI~SRcq-~~ 160 (369)
T Consensus 250 GIVFIDEIDKIa~~~~~~g~DVS~EGVQrdLLpivEGt~V~tK~G~V~TdhILFIasGAFh~sKPSDLIPEl~GRlPv~v 329 (442)
T PRK05201 250 GIVFIDEIDKIAKRGEGSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVAKPSDLIPELQGRFPIRV 329 (442)
T ss_pred CCEEECHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHCCCCEEEE
T ss_conf 70451146565303578898977330788878875388555677760255034550450014782022498717550588
Q ss_pred HCCCCCCHHHHHHHHH-----------HHHHCCC--CCCHHHHHHHHHCC
Q ss_conf 1024540013567876-----------4310134--56256644565316
Q 537021.9.peg.4 161 DLHRISIGDLIELFTK-----------ILQEESI--EFDPEAVAMIARAS 197 (369)
Q Consensus 161 ~f~~l~~~~i~~~L~~-----------i~~~E~i--~~d~~~l~~ia~~s 197 (369)
T Consensus 330 ~L~~L~~~dl~~ILtepknsL~kQy~~Lf~~egv~L~Ft~~Al~~IA~~A 379 (442)
T PRK05201 330 ELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIA 379 (442)
T ss_pred ECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHH
T ss_conf 82449999999996786157899999998624967998479999999999