HHsearch alignment for GI: peg_472 and conserved domain: PRK05564
>PRK05564 DNA polymerase III subunit delta'; Validated.
Probab=100.00 E-value=0 Score=514.79 Aligned_cols=305 Identities=22% Similarity=0.334 Sum_probs=272.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL 80 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~ 80 (369)
T Consensus 6 iiGq~~i~~~L~~~i~~~rl~HAyLF~Gp~G~GK~~~A~~~A~~ll~~~~~--------------------~~~~D~~~~ 65 (313)
T PRK05564 6 IIGHENIKNRIDNSIIKGKFSHASLIVGEDGIGKSILAKEIANKILGKSEQ--------------------REYVDIIEY 65 (313)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCC--------------------CCCCCEEEE
T ss_conf 268299999999999879987504327999850999999999998289977--------------------889865886
Q ss_pred CCCC--CCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf 5332--23345556655544565420465237751156648001678999997212211146650675433035675433
Q 537021.9.peg.4 81 DAAS--HTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQ 158 (369)
Q Consensus 81 ~~~s--~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq 158 (369)
T Consensus 66 ~~~~~~~I~vd~IR~l~~~~~~~p~~g~~KV~II~~ae~m~~~AaNALLKtLEEPP~~t~fIL~t~~~~~lLpTI~SRCQ 145 (313)
T PRK05564 66 KPINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYKSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQ 145 (313)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHCHHHHHHHHHCCCCCCCCEEEEEEECCHHHCCCHHHCCCE
T ss_conf 33225699989999999998408625895699980777758999999845503689985899864983547577870653
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHH
Q ss_conf 32102454001356787643101345625664456531676420011000111000000121032200013567777788
Q 537021.9.peg.4 159 RFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMD 238 (369)
Q Consensus 159 ~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~ 238 (369)
T Consensus 146 ~~~f~~l~~~~i~~~L~~----~~~~~~~~~~~~~~~~s~G~~~~a~~~~~~------~~-----~~~~-----~~~~~~ 205 (313)
T PRK05564 146 IYKLNRLSKEDIEKFISY----KYNDIDEENKNSAIAFSDGIPGKVEKFIED------DS-----LKDI-----RNMSLE 205 (313)
T ss_pred EEECCCCCHHHHHHHHHH----HCCCCCHHHHHHHHHHCCCCHHHHHHHHHH------HH-----HHHH-----HHHHHH
T ss_conf 566899899999999998----625899999999999829987999998405------79-----9999-----999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 88763013633467887654304762135787775348999999745741223449988999999998629989999999
Q 537021.9.peg.4 239 LFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFW 318 (369)
Q Consensus 239 Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~l 318 (369)
T Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~rD~l~~k~~~~--~~~~~n~d~~~~l~~~a~~~~~~~l~~~~ 283 (313)
T PRK05564 206 ILKDIDKSNINIIIKYENFLISYKENWEEILTCILSYIRDSLLFKETGN--NELIINVDKIEDIKEISEKYSYKKLNKMI 283 (313)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC--CCCEECHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 9999986799999999999998693499999999999999998515598--32016888999999998549999999999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999830278889999999999953
Q 537021.9.peg.4 319 QMILKGISEIEGFSRPMEAVEMVLIRLAH 347 (369)
Q Consensus 319 q~l~~a~~~Lk~n~np~L~lE~lLlkL~~ 347 (369)
T Consensus 284 ~~l~~a~~~l~~n~N~~L~le~lllkl~e 312 (313)
T PRK05564 284 EIINDARNNLSSNTNSTLVFDSMLIKMQE 312 (313)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99999999987459989999999998843