HHsearch alignment for GI: peg_472 and conserved domain: PRK05564

>PRK05564 DNA polymerase III subunit delta'; Validated.
Probab=100.00  E-value=0  Score=514.79  Aligned_cols=305  Identities=22%  Similarity=0.334  Sum_probs=272.7

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf             92848999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4    1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL   80 (369)
Q Consensus         1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~   80 (369)
T Consensus         6 iiGq~~i~~~L~~~i~~~rl~HAyLF~Gp~G~GK~~~A~~~A~~ll~~~~~--------------------~~~~D~~~~   65 (313)
T PRK05564          6 IIGHENIKNRIDNSIIKGKFSHASLIVGEDGIGKSILAKEIANKILGKSEQ--------------------REYVDIIEY   65 (313)
T ss_pred             CCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCC--------------------CCCCCEEEE
T ss_conf             268299999999999879987504327999850999999999998289977--------------------889865886


Q ss_pred             CCCC--CCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf             5332--23345556655544565420465237751156648001678999997212211146650675433035675433
Q 537021.9.peg.4   81 DAAS--HTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQ  158 (369)
Q Consensus        81 ~~~s--~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq  158 (369)
T Consensus        66 ~~~~~~~I~vd~IR~l~~~~~~~p~~g~~KV~II~~ae~m~~~AaNALLKtLEEPP~~t~fIL~t~~~~~lLpTI~SRCQ  145 (313)
T PRK05564         66 KPINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYKSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQ  145 (313)
T ss_pred             ECCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHCHHHHHHHHHCCCCCCCCEEEEEEECCHHHCCCHHHCCCE
T ss_conf             33225699989999999998408625895699980777758999999845503689985899864983547577870653


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHH
Q ss_conf             32102454001356787643101345625664456531676420011000111000000121032200013567777788
Q 537021.9.peg.4  159 RFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMD  238 (369)
Q Consensus       159 ~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~  238 (369)
T Consensus       146 ~~~f~~l~~~~i~~~L~~----~~~~~~~~~~~~~~~~s~G~~~~a~~~~~~------~~-----~~~~-----~~~~~~  205 (313)
T PRK05564        146 IYKLNRLSKEDIEKFISY----KYNDIDEENKNSAIAFSDGIPGKVEKFIED------DS-----LKDI-----RNMSLE  205 (313)
T ss_pred             EEECCCCCHHHHHHHHHH----HCCCCCHHHHHHHHHHCCCCHHHHHHHHHH------HH-----HHHH-----HHHHHH
T ss_conf             566899899999999998----625899999999999829987999998405------79-----9999-----999999


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf             88763013633467887654304762135787775348999999745741223449988999999998629989999999
Q 537021.9.peg.4  239 LFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFW  318 (369)
Q Consensus       239 Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~l  318 (369)
T Consensus       206 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~rD~l~~k~~~~--~~~~~n~d~~~~l~~~a~~~~~~~l~~~~  283 (313)
T PRK05564        206 ILKDIDKSNINIIIKYENFLISYKENWEEILTCILSYIRDSLLFKETGN--NELIINVDKIEDIKEISEKYSYKKLNKMI  283 (313)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC--CCCEECHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             9999986799999999999998693499999999999999998515598--32016888999999998549999999999


Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             99999999830278889999999999953
Q 537021.9.peg.4  319 QMILKGISEIEGFSRPMEAVEMVLIRLAH  347 (369)
Q Consensus       319 q~l~~a~~~Lk~n~np~L~lE~lLlkL~~  347 (369)
T Consensus       284 ~~l~~a~~~l~~n~N~~L~le~lllkl~e  312 (313)
T PRK05564        284 EIINDARNNLSSNTNSTLVFDSMLIKMQE  312 (313)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             99999999987459989999999998843