HHsearch alignment for GI: peg_472 and conserved domain: PRK05707
>PRK05707 DNA polymerase III subunit delta'; Validated.
Probab=100.00 E-value=0 Score=497.23 Aligned_cols=309 Identities=21% Similarity=0.264 Sum_probs=258.5
Q ss_pred HHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC---CCCCCH
Q ss_conf 99998287670620107879888899999999961468777886658789997799997798778222453---322334
Q 537021.9.peg.4 12 TNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDA---ASHTSI 88 (369)
Q Consensus 12 ~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~---~s~~~i 88 (369)
T Consensus 13 ~~l~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~LlC~~~~~~----~~Cg~C~sC~~~~~~~HPD~~~i~pe~~~~~I~I 88 (328)
T PRK05707 13 QQLAGRGRHAHAYLLHGPAGIGKRALAERLAAFLLCEAPQGG----GACGSCKGCQLLAAGSHPDNFVLEPEEADKPIKV 88 (328)
T ss_pred HHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCC----CCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCH
T ss_conf 999977982204644799986799999999999848999998----9998888999987589998799842666776979
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCH
Q ss_conf 55566555445654204652377511566480016789999972122111466506754330356754333210245400
Q 537021.9.peg.4 89 DDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRFDLHRISIG 168 (369)
Q Consensus 89 d~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~~f~~l~~~ 168 (369)
T Consensus 89 dqIR~l~~~~~~~~~~g~~KV~iI~~Ae~m~~~AaNALLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~p~~e 168 (328)
T PRK05707 89 DQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGQTVLLLISHQPSRLLPTIKSRCQQLACPLPSNE 168 (328)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEEEHHHHHCHHHHHHHHHHHHCCCCCEEEEEEECCHHHCHHHHHHCCEEEECCCCCHH
T ss_conf 99999999983176678957999502877389999999998507898759998609934482588741413348998999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCH
Q ss_conf 13567876431013456256644565316764200110001110000001210322000135677777888876301363
Q 537021.9.peg.4 169 DLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLFGYLIKGDI 248 (369)
Q Consensus 169 ~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll~ai~~~d~ 248 (369)
T Consensus 169 ~~~~~L~~~~----~~~~~~~a~~ll~la~G~p~~A~~l~~~~-------~~~----------~r~~~~~~l~~l~~~~~ 227 (328)
T PRK05707 169 PSLQWLQQAL----PESDAEERIELLTLAAGSPLRALQLHAQG-------VRE----------QRARVVDGVKKLLKQQQ 227 (328)
T ss_pred HHHHHHHHHC----CCCCHHHHHHHHHHCCCCHHHHHHHHCCC-------HHH----------HHHHHHHHHHHHHHCCC
T ss_conf 9999999755----65578999999997499999999874866-------899----------99999999999983878
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 34678876543047621357877753489999997457412234499889999999986299899999999999999983
Q 537021.9.peg.4 249 INVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQMILKGISEI 328 (369)
Q Consensus 249 ~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~l~~a~~~L 328 (369)
T Consensus 228 -~~~~~~~~~~k--~~~~~~l~~l~~~~~D~l~~~~~~~~--~~l~~~d~~~~i~~la~~~s~~~l~~~~~~l~~~r~~l 302 (328)
T PRK05707 228 -SASQLAESWLK--VPLPLLFDWFCDWAHLILRYQLTQDE--EGLGLADMRKVLQYLAQKSPQAKVLALQQWLLEQRQKV 302 (328)
T ss_pred -CHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHCCCH--HHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf -89999999750--57999999999999999999825971--41047889999999987299999999999999999998
Q ss_pred --HCCCCHHHHHHHHHHHHHHHCC
Q ss_conf --0278889999999999953304
Q 537021.9.peg.4 329 --EGFSRPMEAVEMVLIRLAHAVQ 350 (369)
Q Consensus 329 --k~n~np~L~lE~lLlkL~~~~~ 350 (369)
T Consensus 303 ~~~~NvN~~L~lE~Lll~~~~L~~ 326 (328)
T PRK05707 303 LGKANLNRVLLLEALLVQWAGLPG 326 (328)
T ss_pred HHCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 636998889999999999857447