HHsearch alignment for GI: peg_472 and conserved domain: PRK05917
>PRK05917 DNA polymerase III subunit delta'; Validated.
Probab=100.00 E-value=0 Score=398.71 Aligned_cols=275 Identities=19% Similarity=0.279 Sum_probs=216.3
Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 48999999999982876706201078798888999999999614687778866587899977999977987782224533
Q 537021.9.peg.4 4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA 83 (369)
Q Consensus 4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~ 83 (369)
T Consensus 2 ~~~~We~L~~~i~~~Rl~HAyLf~Gp~G~GK~~~A~~~A~~LLc~~~------------p~~~~~i~~~~HPD~~~i~pe 69 (290)
T PRK05917 2 ENAAWEALLQRVRDQKVPSAILLHGQDLSNLSQYAYELASLILLESS------------PEAQYKISQKIHPDIHEFFPE 69 (290)
T ss_pred CCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCC------------CCHHHHHHHCCCCCEEEECCC
T ss_conf 85499999999983996606876899986599999999999857899------------616889874689985996157
Q ss_pred CC---CCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 22---334555665554456542046523775115664800167899999721221114665067543303567543332
Q 537021.9.peg.4 84 SH---TSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSRCQRF 160 (369)
Q Consensus 84 s~---~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SRcq~~ 160 (369)
T Consensus 70 ~k~~~~~Id~iR~l~~~i~~~p~~g~~KV~IId~Ad~Mn~~AaNALLKtLEEPP~~tvfILit~~~~~lLpTI~SRCQ~I 149 (290)
T PRK05917 70 GKGRLHSIETPRAIKKQIWIHPYEANYKIYIIHEADRMTLDAISAFLKVLEDPPKHSVIILTSAKPQRLPPTIRSRSLSI 149 (290)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCCCCCEEEEEEECCHHHCCHHHHHCCCEE
T ss_conf 77887867899999999641864688269997567763899999999973479878599998699254823776335116
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHHHHHH
Q ss_conf 10245400135678764310134562566445653167642001100011100000012103220001356777778888
Q 537021.9.peg.4 161 DLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRIMDLF 240 (369)
Q Consensus 161 ~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i~~Ll 240 (369)
T Consensus 150 ~i~~~e---------------~~~i~~e~~~~l~~~a~g~~~----~~~--------------~~~~------------- 183 (290)
T PRK05917 150 HIPGEE---------------KTLPSKEDIAYLIRYAQGKES----VTE--------------VGQI------------- 183 (290)
T ss_pred ECCCCC---------------CCCCCHHHHHHHHHHHCCCHH----HHH--------------HHHH-------------
T ss_conf 777620---------------134788999999998469738----889--------------9988-------------
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 76301363346788765430476213578777534899999974574122344998899999999862998999999999
Q 537021.9.peg.4 241 GYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLSRFWQM 320 (369)
Q Consensus 241 ~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~~~lq~ 320 (369)
T Consensus 184 ---~k~~~d~~----~~~~r--~k~~~~l~~ll~~~Rd~~~~~~~~~~-s~l~~-~~~~~~i~----~~~~~~l~~v~~~ 248 (290)
T PRK05917 184 ---VKGSADTD----KQVLR--DKTKRMLEVLLQLFRDRFTLALKVPA-SALAY-PDYLKEIL----TLPVLPLEKVLSI 248 (290)
T ss_pred ---HCCHHHHH----HHHHH--HHHHHHHHHHHHHHHHHHHHHCCCCH-HHHCC-CHHHHHHH----HCCCCCHHHHHHH
T ss_conf ---30127766----78778--99999999999999999998616973-55228-06899998----6635679999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 9999998302788899999999999533049
Q 537021.9.peg.4 321 ILKGISEIEGFSRPMEAVEMVLIRLAHAVQL 351 (369)
Q Consensus 321 l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~~ 351 (369)
T Consensus 249 i~~a~~~l~~~~~~~~~~~~~~l~~~~l~~~ 279 (290)
T PRK05917 249 IERAVQALDNSSSATSCLEWVALQLVSLQNR 279 (290)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999998503676689999999999987637