HHsearch alignment for GI: peg_472 and conserved domain: PRK06893
>PRK06893 DNA replication initiation factor; Validated.
Probab=98.91 E-value=3e-08 Score=81.00 Aligned_cols=195 Identities=12% Similarity=0.180 Sum_probs=125.4
Q ss_pred CCH-HHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 284-8999999999982876706201078798888999999999614687778866587899977999977987782224
Q 537021.9.peg.4 2 IGQ-KPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVEL 80 (369)
Q Consensus 2 iGq-~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~ 80 (369)
T Consensus 20 ~~~n~~~~~~l~~~~~~~~~~~-l~i~G~~gsGKTHLLqa~~~~~~~~~~~~-------------------------~yi 73 (229)
T PRK06893 20 SDNNLLLLDSLRKNFIDLKQPF-FYIWGGKSSGKSHLLKAVSNHYLLNQRTA-------------------------IYI 73 (229)
T ss_pred CCCHHHHHHHHHHHCCCCCCCE-EEEECCCCCCHHHHHHHHHHHHHHHCCCE-------------------------EEE
T ss_conf 6874999999997550246987-99989999988999999999999718985-------------------------999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHC--CCCHHHHHHHHHHHCC-CCCCEEEEE-CC-CCC---CCHH
Q ss_conf 53322334555665554456542046523775115664--8001678999997212-211146650-67-543---3035
Q 537021.9.peg.4 81 DAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQML--STAAFNGLLKTLEEPP-PHVKFIFAT-TE-IRK---IPIT 152 (369)
Q Consensus 81 ~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m--~~~a~NaLLK~lEEPp-~~~~fil~t-~~-~~~---ll~T 152 (369)
T Consensus 74 ~~~~--~~~~~~~~l~~l------~~~d~l~iDDi~~i~g~~~~e~~lF~l~N~l~~~~~~~ll~ss~~~p~~l~~~l~D 145 (229)
T PRK06893 74 PLSK--SQYFSPAVLENL------EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKESGKTLLLISANQSPHALQIKLPD 145 (229)
T ss_pred EHHH--HHHCCHHHHHHH------HHCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCHHHH
T ss_conf 7377--564069999876------54797999672342488389999999999999759917998579883322100267
Q ss_pred HHHHH---HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCC---CHHHCCCCHHHHHH
Q ss_conf 67543---3321024540013567876431013456256644565316764200110001110---00000121032200
Q 537021.9.peg.4 153 VLSRC---QRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAI---ARCNDKIVTSSVRL 226 (369)
Q Consensus 153 I~SRc---q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i---~~~~~~i~~e~v~~ 226 (369)
T Consensus 146 L~SRl~~~~~~~i~~~dd~~~~~iL~~~a~~rgl~l~~~v~~yl~~r~~R~~~~l~~~l~~Ld~~sl~~kr~iTiplvke 225 (229)
T PRK06893 146 LASRLTWGEIYQLNDLTDEQKIEVLQRNAYQRGIELSDETANFLLKRLDRDMHTLFDALDLLDKASLQAQRKLTIPFVKE 225 (229)
T ss_pred HHHHHHCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 99999688369966777579999999999964999998999999998347899999999999999998089999999999
Q ss_pred CCCC
Q ss_conf 0135
Q 537021.9.peg.4 227 MLAL 230 (369)
Q Consensus 227 llg~ 230 (369)
T Consensus 226 vL~l 229 (229)
T PRK06893 226 ILGL 229 (229)
T ss_pred HHCC
T ss_conf 8683