HHsearch alignment for GI: peg_472 and conserved domain: PRK06964
>PRK06964 DNA polymerase III subunit delta'; Validated.
Probab=100.00 E-value=0 Score=463.59 Aligned_cols=306 Identities=21% Similarity=0.258 Sum_probs=251.2
Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 48999999999982876706201078798888999999999614687778866587899977999977987782224533
Q 537021.9.peg.4 4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA 83 (369)
Q Consensus 4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~ 83 (369)
T Consensus 6 ~~~~w~~l~~--~~~rl~HA~Lf~Gp~G~Gk~~lA~~~A~~llC~~~~~~~---~~Cg~C~sC~~~~~~~HPD~~~i~Pe 80 (342)
T PRK06964 6 QTDDWNRLQA--LRARWPHALLLHGQAGIGKLAFAQHLAQGLLCETPQPNG---EPCGTCAACTWFAQGNHPDYRIVRPE 80 (342)
T ss_pred CHHHHHHHHH--CCCCHHEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCC---CCCCCCHHHHHHHCCCCCCEEEECCC
T ss_conf 5699999998--068713057657999867999999999998389999888---97867777888862799974553400
Q ss_pred -----------------------------CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCC
Q ss_conf -----------------------------223345556655544565420465237751156648001678999997212
Q 537021.9.peg.4 84 -----------------------------SHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPP 134 (369)
Q Consensus 84 -----------------------------s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp 134 (369)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~idqiR~l~~~l~~~~~~g~~kVviI~~Ae~mn~~aaNalLK~LEEPp 160 (342)
T PRK06964 81 ALAAEAPGAADDAKAADADEGGKKTRAPSKEIKIEQVRALLDFCGVGSHRGGARVVVLYPAEALNVAAANALLKTLEEPP 160 (342)
T ss_pred HHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCCC
T ss_conf 21022333210010111222101235655645499999999997007545884499982778738999999999723798
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCH
Q ss_conf 21114665067543303567543332102454001356787643101345625664456531676420011000111000
Q 537021.9.peg.4 135 PHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIAR 214 (369)
Q Consensus 135 ~~~~fil~t~~~~~ll~TI~SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~ 214 (369)
T Consensus 161 ~~~~~iL~~~~~~~llpTI~SRcq~~~~~~~~~~~~~~~L~~----~~v~---~a~~-lla~a~G~p~~Al~l~~~---- 228 (342)
T PRK06964 161 PGVVFLLVSARIDRLLPTILSRCRQWPMTVPAPEAAAAWLAA----QGVA---DANA-LLAEAGGAPLAALALASD---- 228 (342)
T ss_pred CCEEEEEEECCHHHCCHHHHHCCEEECCCCCCHHHHHHHHHH----CCCC---CHHH-HHHHCCCCHHHHHHHHCC----
T ss_conf 784899986992548368876764302899599999999987----3986---3999-998809998999987167----
Q ss_pred HHCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 00012103220001356777778888763013633467887654304762135787775348999999745741223449
Q 537021.9.peg.4 215 CNDKIVTSSVRLMLALADRNRIMDLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLY 294 (369)
Q Consensus 215 ~~~~i~~e~v~~llg~~~~~~i~~Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~ 294 (369)
T Consensus 229 -~~---------------~~~~~~~l~~L~~~~~~~~~~~ae~~~k--~~~~~~l~~l~~w~~DlL~~~~~~~----~~~ 286 (342)
T PRK06964 229 -EN---------------RPLRDWTLGQLAAGAACDAFACGETLQK--LPVPAVLGWLQRWLYDLLAQRLAGA----PRY 286 (342)
T ss_pred -CH---------------HHHHHHHHHHHHCCCCCCHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHCCC----CCC
T ss_conf -35---------------9999999999864332579999999844--7899999999999999999982598----112
Q ss_pred CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 988999999998629989999999999999998302788899999999999533
Q 537021.9.peg.4 295 SEAENARALQYSKEVSITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIRLAHA 348 (369)
Q Consensus 295 ~~~e~~~i~~~a~~i~~~~L~~~lq~l~~a~~~Lk~n~np~L~lE~lLlkL~~~ 348 (369)
T Consensus 287 ~~~~~~~l~~lA~~~~~~~L~~~~~~l~~~r~~l~~nvN~~L~lE~LlL~~~e~ 340 (342)
T PRK06964 287 FPAQRAALARCAAAADANAFARFAKAVTRQRAVENHPLAARLVFEELFLGYREL 340 (342)
T ss_pred CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 677999999988508999999999999999998629987799999999999997