HHsearch alignment for GI: peg_472 and conserved domain: PRK06964

>PRK06964 DNA polymerase III subunit delta'; Validated.
Probab=100.00  E-value=0  Score=463.59  Aligned_cols=306  Identities=21%  Similarity=0.258  Sum_probs=251.2

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf             48999999999982876706201078798888999999999614687778866587899977999977987782224533
Q 537021.9.peg.4    4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA   83 (369)
Q Consensus         4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~   83 (369)
T Consensus         6 ~~~~w~~l~~--~~~rl~HA~Lf~Gp~G~Gk~~lA~~~A~~llC~~~~~~~---~~Cg~C~sC~~~~~~~HPD~~~i~Pe   80 (342)
T PRK06964          6 QTDDWNRLQA--LRARWPHALLLHGQAGIGKLAFAQHLAQGLLCETPQPNG---EPCGTCAACTWFAQGNHPDYRIVRPE   80 (342)
T ss_pred             CHHHHHHHHH--CCCCHHEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCC---CCCCCCHHHHHHHCCCCCCEEEECCC
T ss_conf             5699999998--068713057657999867999999999998389999888---97867777888862799974553400


Q ss_pred             -----------------------------CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCC
Q ss_conf             -----------------------------223345556655544565420465237751156648001678999997212
Q 537021.9.peg.4   84 -----------------------------SHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPP  134 (369)
Q Consensus        84 -----------------------------s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp  134 (369)
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~idqiR~l~~~l~~~~~~g~~kVviI~~Ae~mn~~aaNalLK~LEEPp  160 (342)
T PRK06964         81 ALAAEAPGAADDAKAADADEGGKKTRAPSKEIKIEQVRALLDFCGVGSHRGGARVVVLYPAEALNVAAANALLKTLEEPP  160 (342)
T ss_pred             HHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCCC
T ss_conf             21022333210010111222101235655645499999999997007545884499982778738999999999723798


Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCH
Q ss_conf             21114665067543303567543332102454001356787643101345625664456531676420011000111000
Q 537021.9.peg.4  135 PHVKFIFATTEIRKIPITVLSRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIAR  214 (369)
Q Consensus       135 ~~~~fil~t~~~~~ll~TI~SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~  214 (369)
T Consensus       161 ~~~~~iL~~~~~~~llpTI~SRcq~~~~~~~~~~~~~~~L~~----~~v~---~a~~-lla~a~G~p~~Al~l~~~----  228 (342)
T PRK06964        161 PGVVFLLVSARIDRLLPTILSRCRQWPMTVPAPEAAAAWLAA----QGVA---DANA-LLAEAGGAPLAALALASD----  228 (342)
T ss_pred             CCEEEEEEECCHHHCCHHHHHCCEEECCCCCCHHHHHHHHHH----CCCC---CHHH-HHHHCCCCHHHHHHHHCC----
T ss_conf             784899986992548368876764302899599999999987----3986---3999-998809998999987167----


Q ss_pred             HHCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             00012103220001356777778888763013633467887654304762135787775348999999745741223449
Q 537021.9.peg.4  215 CNDKIVTSSVRLMLALADRNRIMDLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLY  294 (369)
Q Consensus       215 ~~~~i~~e~v~~llg~~~~~~i~~Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~  294 (369)
T Consensus       229 -~~---------------~~~~~~~l~~L~~~~~~~~~~~ae~~~k--~~~~~~l~~l~~w~~DlL~~~~~~~----~~~  286 (342)
T PRK06964        229 -EN---------------RPLRDWTLGQLAAGAACDAFACGETLQK--LPVPAVLGWLQRWLYDLLAQRLAGA----PRY  286 (342)
T ss_pred             -CH---------------HHHHHHHHHHHHCCCCCCHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHCCC----CCC
T ss_conf             -35---------------9999999999864332579999999844--7899999999999999999982598----112


Q ss_pred             CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             988999999998629989999999999999998302788899999999999533
Q 537021.9.peg.4  295 SEAENARALQYSKEVSITFLSRFWQMILKGISEIEGFSRPMEAVEMVLIRLAHA  348 (369)
Q Consensus       295 ~~~e~~~i~~~a~~i~~~~L~~~lq~l~~a~~~Lk~n~np~L~lE~lLlkL~~~  348 (369)
T Consensus       287 ~~~~~~~l~~lA~~~~~~~L~~~~~~l~~~r~~l~~nvN~~L~lE~LlL~~~e~  340 (342)
T PRK06964        287 FPAQRAALARCAAAADANAFARFAKAVTRQRAVENHPLAARLVFEELFLGYREL  340 (342)
T ss_pred             CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf             677999999988508999999999999999998629987799999999999997