HHsearch alignment for GI: peg_472 and conserved domain: PRK08084
>PRK08084 DNA replication initiation factor; Provisional.
Probab=98.80 E-value=1.9e-07 Score=75.03 Aligned_cols=194 Identities=14% Similarity=0.175 Sum_probs=124.5
Q ss_pred CCC-HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC
Q ss_conf 928-4899999999998287670620107879888899999999961468777886658789997799997798778222
Q 537021.9.peg.4 1 MIG-QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVE 79 (369)
Q Consensus 1 iiG-q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e 79 (369)
T Consensus 25 i~g~n~~~~~al~~~~~~~~-~~~l~l~G~~G~GKTHLLqA~~~~~~~~~~~-------------------------~~y 78 (235)
T PRK08084 25 YPGDNDSLLAALQNVLRQEH-SGYIYLWGREGAGRSHLLHAACAELSQRGDA-------------------------VGY 78 (235)
T ss_pred CCCCCHHHHHHHHHHHHCCC-CCEEEEECCCCCCHHHHHHHHHHHHHCCCCC-------------------------EEE
T ss_conf 44886999999999985789-8769998999988899999999999707985-------------------------799
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC--CCHHHHHHHHHHHCC--CCCCEEEEECCC-CC---CCH
Q ss_conf 4533223345556655544565420465237751156648--001678999997212--211146650675-43---303
Q 537021.9.peg.4 80 LDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS--TAAFNGLLKTLEEPP--PHVKFIFATTEI-RK---IPI 151 (369)
Q Consensus 80 ~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~--~~a~NaLLK~lEEPp--~~~~fil~t~~~-~~---ll~ 151 (369)
T Consensus 79 l~~~~--~~~~~~~~l~~l~------~~dll~iDDi~~i~g~~~~ee~lF~l~N~~~~~g~~~ll~ts~~~P~~l~~~l~ 150 (235)
T PRK08084 79 VPLDK--RAWFVPEVLEGME------QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLP 150 (235)
T ss_pred EEHHH--HHHHHHHHHHHHH------HCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHCCCCCH
T ss_conf 87798--6651799998764------189899827455469978999999999999984896699967988243023128
Q ss_pred HHHHHH---HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHH---HCCCCHHHHH
Q ss_conf 567543---3321024540013567876431013456256644565316764200110001110000---0012103220
Q 537021.9.peg.4 152 TVLSRC---QRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARC---NDKIVTSSVR 225 (369)
Q Consensus 152 TI~SRc---q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~---~~~i~~e~v~ 225 (369)
T Consensus 151 DL~SRl~~g~~~~i~~~dde~~~~iL~~~a~~rgl~l~~~V~~yl~~~~~R~~~~L~~~l~~Ld~~Sl~~kr~iTip~vk 230 (235)
T PRK08084 151 DLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDKASITAQRKLTIPFVK 230 (235)
T ss_pred HHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 89999956972785599989999999999997399999899999998615889999999999999999819999999999
Q ss_pred HCC
Q ss_conf 001
Q 537021.9.peg.4 226 LML 228 (369)
Q Consensus 226 ~ll 228 (369)
T Consensus 231 evL 233 (235)
T PRK08084 231 EIL 233 (235)
T ss_pred HHH
T ss_conf 996