HHsearch alignment for GI: peg_472 and conserved domain: PRK08084

>PRK08084 DNA replication initiation factor; Provisional.
Probab=98.80  E-value=1.9e-07  Score=75.03  Aligned_cols=194  Identities=14%  Similarity=0.175  Sum_probs=124.5

Q ss_pred             CCC-HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC
Q ss_conf             928-4899999999998287670620107879888899999999961468777886658789997799997798778222
Q 537021.9.peg.4    1 MIG-QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVE   79 (369)
Q Consensus         1 iiG-q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e   79 (369)
T Consensus        25 i~g~n~~~~~al~~~~~~~~-~~~l~l~G~~G~GKTHLLqA~~~~~~~~~~~-------------------------~~y   78 (235)
T PRK08084         25 YPGDNDSLLAALQNVLRQEH-SGYIYLWGREGAGRSHLLHAACAELSQRGDA-------------------------VGY   78 (235)
T ss_pred             CCCCCHHHHHHHHHHHHCCC-CCEEEEECCCCCCHHHHHHHHHHHHHCCCCC-------------------------EEE
T ss_conf             44886999999999985789-8769998999988899999999999707985-------------------------799


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC--CCHHHHHHHHHHHCC--CCCCEEEEECCC-CC---CCH
Q ss_conf             4533223345556655544565420465237751156648--001678999997212--211146650675-43---303
Q 537021.9.peg.4   80 LDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLS--TAAFNGLLKTLEEPP--PHVKFIFATTEI-RK---IPI  151 (369)
Q Consensus        80 ~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~--~~a~NaLLK~lEEPp--~~~~fil~t~~~-~~---ll~  151 (369)
T Consensus        79 l~~~~--~~~~~~~~l~~l~------~~dll~iDDi~~i~g~~~~ee~lF~l~N~~~~~g~~~ll~ts~~~P~~l~~~l~  150 (235)
T PRK08084         79 VPLDK--RAWFVPEVLEGME------QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLP  150 (235)
T ss_pred             EEHHH--HHHHHHHHHHHHH------HCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHCCCCCH
T ss_conf             87798--6651799998764------189899827455469978999999999999984896699967988243023128


Q ss_pred             HHHHHH---HHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHH---HCCCCHHHHH
Q ss_conf             567543---3321024540013567876431013456256644565316764200110001110000---0012103220
Q 537021.9.peg.4  152 TVLSRC---QRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARC---NDKIVTSSVR  225 (369)
Q Consensus       152 TI~SRc---q~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~---~~~i~~e~v~  225 (369)
T Consensus       151 DL~SRl~~g~~~~i~~~dde~~~~iL~~~a~~rgl~l~~~V~~yl~~~~~R~~~~L~~~l~~Ld~~Sl~~kr~iTip~vk  230 (235)
T PRK08084        151 DLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDKASITAQRKLTIPFVK  230 (235)
T ss_pred             HHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf             89999956972785599989999999999997399999899999998615889999999999999999819999999999


Q ss_pred             HCC
Q ss_conf             001
Q 537021.9.peg.4  226 LML  228 (369)
Q Consensus       226 ~ll  228 (369)
T Consensus       231 evL  233 (235)
T PRK08084        231 EIL  233 (235)
T ss_pred             HHH
T ss_conf             996