HHsearch alignment for GI: peg_472 and conserved domain: PRK08699
>PRK08699 DNA polymerase III subunit delta'; Validated.
Probab=100.00 E-value=0 Score=446.17 Aligned_cols=307 Identities=22% Similarity=0.293 Sum_probs=251.4
Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 48999999999982876706201078798888999999999614687778866587899977999977987782224533
Q 537021.9.peg.4 4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA 83 (369)
Q Consensus 4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~ 83 (369)
T Consensus 6 ~~~~w~~l~~--~~~rl~HA~L~~Gp~G~Gk~~~A~~~A~~llC~~~~~~~---~~Cg~C~sC~~~~~g~HPD~~~i~p~ 80 (325)
T PRK08699 6 HQEQWRQIAE--HWERRPNAWLFVGKKGTGKTAFARFAAKALLCETPAPGC---KPCGECMSCHLFGQGSHPDFYEITPL 80 (325)
T ss_pred CHHHHHHHHH--HCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCC---CCCCCCHHHHHHHCCCCCCEEEEECC
T ss_conf 5799999998--344501179757999978999999999998289998889---98988888999865999996885134
Q ss_pred ------C----CCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHH
Q ss_conf ------2----233455566555445654204652377511566480016789999972122111466506754330356
Q 537021.9.peg.4 84 ------S----HTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITV 153 (369)
Q Consensus 84 ------s----~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI 153 (369)
T Consensus 81 ~~~~~~g~~~~~I~idqiR~l~~~~~~~~~~~~~kV~ii~~ae~mn~~aaNaLLK~LEEPp~~~~fiL~t~~~~~llpTI 160 (325)
T PRK08699 81 ADEPENGRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNVQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTI 160 (325)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCCCCCEEEEEEECCHHHCCCHH
T ss_conf 45300166556676999999999971086568946999857777589999999998417888848999879846462339
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCH
Q ss_conf 75433321024540013567876431013456256644565316764200110001110000001210322000135677
Q 537021.9.peg.4 154 LSRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADR 233 (369)
Q Consensus 154 ~SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~ 233 (369)
T Consensus 161 ~SRc~~~~~~~p~~~~~~~~L~~----~gv~-~~~~--~La-~~~gapl-----~----~-~~~~~-------------~ 209 (325)
T PRK08699 161 KSRCRKMVLPAPSHEEALAYLRE----RGVA-EPEE--RLA-FHSGAPL-----F----D-EEDEL-------------R 209 (325)
T ss_pred HHCCCCCCCCCCCHHHHHHHHHH----CCCC-CHHH--HHH-HCCCCCH-----H----H-HCCHH-------------H
T ss_conf 86454210899599999999997----4897-6789--997-6599811-----2----3-17436-------------9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHH
Q ss_conf 77788887630136334678876543047621357877753489999997457412234499889999999986299899
Q 537021.9.peg.4 234 NRIMDLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITF 313 (369)
Q Consensus 234 ~~i~~Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~ 313 (369)
T Consensus 210 ~~r~~ll~~L~~~~~~~~l~~a~~~~k~~~~l~~~l~wlq~wl~DL~~~~~~~----~~~y~~d~~~~L~~lA~~~~~~~ 285 (325)
T PRK08699 210 ALRAKLLDILAEPRLLKILDYAALFDKEKLPLAVFVGWMQKWLVDLGLCLQHM----KPVYYPAYEDRLLQTASGFRPRN 285 (325)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC----CCCCCHHHHHHHHHHHHHCCHHH
T ss_conf 99999999972644055999999987565848999999999999999998269----85438768999999987089999
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999830278889999999999953304
Q 537021.9.peg.4 314 LSRFWQMILKGISEIEGFSRPMEAVEMVLIRLAHAVQ 350 (369)
Q Consensus 314 L~~~lq~l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~ 350 (369)
T Consensus 286 L~~~~~~l~~~~r~~~~nlN~~L~lE~LLl~y~~l~~ 322 (325)
T PRK08699 286 VFAAEDMLKQLAPYGFHTLNVKMQIEHLLINYLELKK 322 (325)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999999998545998789999999999998875