HHsearch alignment for GI: peg_472 and conserved domain: PRK08769

>PRK08769 DNA polymerase III subunit delta'; Validated.
Probab=100.00  E-value=0  Score=420.31  Aligned_cols=298  Identities=19%  Similarity=0.261  Sum_probs=233.6

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf             48999999999982876706201078798888999999999614687778866587899977999977987782224533
Q 537021.9.peg.4    4 QKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIRGNHVDVVELDAA   83 (369)
Q Consensus         4 q~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~~~~~d~~e~~~~   83 (369)
T Consensus         9 q~~~~~~L~~~i~~~rl~HA~Lf~Gp~G~GK~~~A~~~A~~llc~~~-------~~~~~~~~~~~i~~g~HPD~~~i~~~   81 (319)
T PRK08769          9 QQRAFDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGP-------DPALAQRTRQLIAAGTHPDLQLVSFI   81 (319)
T ss_pred             CHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC-------CCCCCCHHHHHHHCCCCCCEEEEECC
T ss_conf             68999999999976994206875899987899999999999837997-------97654338899966899896877534


Q ss_pred             ---------CCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHH
Q ss_conf             ---------22334555665554456542046523775115664800167899999721221114665067543303567
Q 537021.9.peg.4   84 ---------SHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVL  154 (369)
Q Consensus        84 ---------s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~  154 (369)
T Consensus        82 ~~~~~~k~k~~I~IdqiR~l~~~~~~~p~~g~~KV~IId~Ad~mn~~AaNalLK~LEEPp~~~~~iL~~~~~~~ll~TI~  161 (319)
T PRK08769         82 PNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRSACNALLKTLEEPSPGRYLWLISAQPARLPATIR  161 (319)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHCCHHHH
T ss_conf             44454311234869999999999613720279569998066752899999999982279988489998699365824776


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHH
Q ss_conf             54333210245400135678764310134562566445653167642001100011100000012103220001356777
Q 537021.9.peg.4  155 SRCQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRN  234 (369)
Q Consensus       155 SRcq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~  234 (369)
T Consensus       162 SRCq~~~~~~p~~~~~~~~L~~----~g--~~~~~a~~~l~~a~g~p~~A~~~~~------~~~~~-----------~~~  218 (319)
T PRK08769        162 SRCQRLEFKLPPAHEALAWLLS----QG--VSERAAQEALDAARGHPGLAAQWLR------EDGLA-----------VRR  218 (319)
T ss_pred             HCCEEECCCCCCHHHHHHHHHH----CC--CCHHHHHHHHHHHCCCHHHHHHHHC------CCCHH-----------HHH
T ss_conf             4850111899699999999997----59--9918999999982799689999843------67277-----------899


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHH
Q ss_conf             77888876301363346788765430476213578777534899999974574122344998899999999862998999
Q 537021.9.peg.4  235 RIMDLFGYLIKGDIINVLQEFSSQYDSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFL  314 (369)
Q Consensus       235 ~i~~Ll~ai~~~d~~~al~~l~~l~~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L  314 (369)
T Consensus       219 ~~~~~l~~i~~~~-~~~l~~aq~w~~d~~~~-----~~l~~~~~l~~~~~-----------------~~~~~~~~~l~~L  275 (319)
T PRK08769        219 AVAQDLEQIASGR-AGAVDVAQRWTNDGQAD-----QRLRHAADLALAQA-----------------SAGLTDPSRLHKL  275 (319)
T ss_pred             HHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH-----------------HHCCCCHHHHHHH
T ss_conf             9999999885074-25999999987602457-----88886440444211-----------------1116882889999


Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCH
Q ss_conf             9999999999998302788899999999999533049998
Q 537021.9.peg.4  315 SRFWQMILKGISEIEGFSRPMEAVEMVLIRLAHAVQLPSP  354 (369)
Q Consensus       315 ~~~lq~l~~a~~~Lk~n~np~L~lE~lLlkL~~~~~~~s~  354 (369)
T Consensus       276 ~~~l~~~~~~r~l~~~nvn~~L~le~Lli~~re~~~~~~~  315 (319)
T PRK08769        276 ATWFDAANRTRDLLRTTVRADLAVTELLLAWREGERQPRS  315 (319)
T ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf             9999999999998538872889999999999974427777