HHsearch alignment for GI: peg_472 and conserved domain: PRK10365
>PRK10365 transcriptional regulatory protein ZraR; Provisional.
Probab=98.29 E-value=2.8e-06 Score=66.47 Aligned_cols=205 Identities=20% Similarity=0.257 Sum_probs=112.8
Q ss_pred CCCHHHHHHHHHHHHHCC-CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCHHHHHHHC--CCCCC
Q ss_conf 928489999999999828-7670620107879888899999999961468777886658-7899977999977--98778
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSG-RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVE-FEGFGEHCQAIIR--GNHVD 76 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~-~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~-~c~~c~~c~~i~~--~~~~d 76 (369)
T Consensus 141 liG~S~am~~v~~~i~~~A~s~~pVLI~GE~GTGK~~~Ar~IH~----~S~r~~~pfv~vnC~~l~~-~l~eseLFG~-- 213 (441)
T PRK10365 141 MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHA----SSARSEKPLVTLNCAALNE-SLLESELFGH-- 213 (441)
T ss_pred CEECCHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHH----CCCCCCCCCEEEECCCCCH-HHHHHHHCCC--
T ss_conf 66689999999999999848899489989998109999999996----5787789807987898984-5558986177--
Q ss_pred CCCCCCCCCCCHHHHHH-HHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHC-----------CCCCCEEEEEC
Q ss_conf 22245332233455566-5554456542046523775115664800167899999721-----------22111466506
Q 537021.9.peg.4 77 VVELDAASHTSIDDVRE-IIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEP-----------PPHVKFIFATT 144 (369)
Q Consensus 77 ~~e~~~~s~~~id~ir~-l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEP-----------p~~~~fil~t~ 144 (369)
T Consensus 214 --~~-g-aftga~~~~~g~~-------~~A~gGTLfLdeI~~l~~~~Q~kLl~~l~~~~~~~~g~~~~~~~d~RiIaat~ 282 (441)
T PRK10365 214 --EK-G-AFTGADKRREGRF-------VEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATH 282 (441)
T ss_pred --CC-C-CCCCCCCCCCCCE-------EECCCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEEECCC
T ss_conf --55-6-8789653468987-------78899825502315299999999998777521000588734413637998378
Q ss_pred CC-CCC------CHHHHHHH--HHHHCCCCCC--HHHHH----HHHHHHHHCCC---CCCHHHHHHH-HHCCCCCCCHHH
Q ss_conf 75-433------03567543--3321024540--01356----78764310134---5625664456-531676420011
Q 537021.9.peg.4 145 EI-RKI------PITVLSRC--QRFDLHRISI--GDLIE----LFTKILQEESI---EFDPEAVAMI-ARASDGSARDGL 205 (369)
Q Consensus 145 ~~-~~l------l~TI~SRc--q~~~f~~l~~--~~i~~----~L~~i~~~E~i---~~d~~~l~~i-a~~s~GslR~Al 205 (369)
T Consensus 283 ~~l~~~v~~g~Fr~dLy~rL~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvREL~ 362 (441)
T PRK10365 283 RDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 (441)
T ss_pred CCHHHHHHCCCCHHHHHHHHCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHH
T ss_conf 89999988198258999886011137826000620099999999999999849998888999999997099998999999
Q ss_pred HCCCCCCCHHHCC-CCHHH
Q ss_conf 0001110000001-21032
Q 537021.9.peg.4 206 SLLDQAIARCNDK-IVTSS 223 (369)
Q Consensus 206 ~lLeq~i~~~~~~-i~~e~ 223 (369)
T Consensus 363 n~iera~~~~~~~~i~~~~ 381 (441)
T PRK10365 363 NAVERAVVLLTGEYISERE 381 (441)
T ss_pred HHHHHHHHHCCCCCCCHHH
T ss_conf 9999999957898688465