HHsearch alignment for GI: peg_472 and conserved domain: PRK10820
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional.
Probab=98.47 E-value=1.5e-06 Score=68.41 Aligned_cols=197 Identities=15% Similarity=0.234 Sum_probs=111.0
Q ss_pred CCCHHHHHHHHHHHHH-CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCHHHHHHHCCCCCCCC
Q ss_conf 9284899999999998-28767062010787988889999999996146877788665-878999779999779877822
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFK-SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTV-EFEGFGEHCQAIIRGNHVDVV 78 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~-~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~-~~c~~c~~c~~i~~~~~~d~~ 78 (369)
T Consensus 206 iig~S~~m~~v~~~a~r~A~~d~pVLI~GEsGTGKellAraIH----~~S~R~~~pFv~vnC~alp~----------~l~ 271 (513)
T PRK10820 206 IVAVSPKMKHVVEQARKLAMLSAPLLITGDTGTGKDLFAYACH----LASPRAKKPYLALNCASIPE----------DAV 271 (513)
T ss_pred HEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHH----HCCCCCCCCCEEEECCCCCH----------HHH
T ss_conf 5108999999999999985989988998989824999999999----66887899826888998996----------789
Q ss_pred C--CCC---CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHC-----------CCCCCEEEE
Q ss_conf 2--453---322334555665554456542046523775115664800167899999721-----------221114665
Q 537021.9.peg.4 79 E--LDA---ASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEP-----------PPHVKFIFA 142 (369)
Q Consensus 79 e--~~~---~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEP-----------p~~~~fil~ 142 (369)
T Consensus 272 eseLFG~a~~~~~G~-----------fe--~A~gGTLfLdEI~~l~~~~Q~kLLr~Lq~~~~~rvG~~~~~~~dvRiIaa 338 (513)
T PRK10820 272 ESELFGHAPEGKKGF-----------FE--QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICA 338 (513)
T ss_pred HHHHCCCCCCCCCCC-----------EE--ECCCCEEEEECHHHCCHHHHHHHHHHHHCCEEEECCCCCEEEEEEEEEEC
T ss_conf 998638766688975-----------57--85898899978365999999999999868979965998535677899962
Q ss_pred ECCC-CC------CCHHHHHHH--HHHHCCCCCC--HHHH----HHHHHHHHHCCC---CCCHHHHHHH-HHCCCCCCCH
Q ss_conf 0675-43------303567543--3321024540--0135----678764310134---5625664456-5316764200
Q 537021.9.peg.4 143 TTEI-RK------IPITVLSRC--QRFDLHRISI--GDLI----ELFTKILQEESI---EFDPEAVAMI-ARASDGSARD 203 (369)
Q Consensus 143 t~~~-~~------ll~TI~SRc--q~~~f~~l~~--~~i~----~~L~~i~~~E~i---~~d~~~l~~i-a~~s~GslR~ 203 (369)
T Consensus 339 T~~dL~~lv~~g~FReDLyyRL~v~~I~lPpLReR~eDI~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNVRE 418 (513)
T PRK10820 339 TQKNLVELVQKGLFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLSADLSTVLTRYGWPGNVRQ 418 (513)
T ss_pred CCHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHH
T ss_conf 65309999872985088999861672558883446556999999999999997599989847999999970899979999
Q ss_pred HHHCCCCCCCHHHC-CCCHHHH
Q ss_conf 11000111000000-1210322
Q 537021.9.peg.4 204 GLSLLDQAIARCND-KIVTSSV 224 (369)
Q Consensus 204 Al~lLeq~i~~~~~-~i~~e~v 224 (369)
T Consensus 419 L~n~iera~~~~~g~~i~~~di 440 (513)
T PRK10820 419 LKNAIYRALTQLEGYELRPQDI 440 (513)
T ss_pred HHHHHHHHHHHCCCCCCCHHHC
T ss_conf 9999999999579985349982