HHsearch alignment for GI: peg_472 and conserved domain: PRK10867
>PRK10867 signal recognition particle protein; Provisional.
Probab=95.58 E-value=0.15 Score=31.54 Aligned_cols=123 Identities=16% Similarity=0.217 Sum_probs=60.2
Q ss_pred CCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH-----HHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 767062010787988889999999996146877788665878999779-----999779877822245332233455566
Q 537021.9.peg.4 19 RIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHC-----QAIIRGNHVDVVELDAASHTSIDDVRE 93 (369)
Q Consensus 19 ~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c-----~~i~~~~~~d~~e~~~~s~~~id~ir~ 93 (369)
T Consensus 98 ~~p~VIm~vGLqGsGKTTT~aKLA~~lk~k~~k--~vllvaaDt~RpaA~eQL~~la~~~~v~~~~~~~-~~dp~~ia~~ 174 (453)
T PRK10867 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKK--KVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDV-GQKPVDIVNA 174 (453)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCC--EEEEECCCCCHHHHHHHHHHHHHHCCCCEECCCC-CCCHHHHHHH
T ss_conf 999699997468885185899999999973898--3798558877058999999999851980436788-9988999999
Q ss_pred HHHHHHHHHHCCCCCEEEEECHHHCCCCHH--HHHHHHHHH--CCCCCCEEEEECCCCCC
Q ss_conf 555445654204652377511566480016--789999972--12211146650675433
Q 537021.9.peg.4 94 IIDQIYYKPISARFRVYIMDEVQMLSTAAF--NGLLKTLEE--PPPHVKFIFATTEIRKI 149 (369)
Q Consensus 94 l~~~~~~~p~~~~~kv~iid~a~~m~~~a~--NaLLK~lEE--Pp~~~~fil~t~~~~~l 149 (369)
T Consensus 175 a~~~----ak~~~~DvvivDTAGRl~~d~~Lm~El-~~i~~~~~P~e~llV~Da~~GQ~a 229 (453)
T PRK10867 175 ALKE----AKLKFYDVLLVDTAGRLHVDEAMMDEI-KQVHASINPVETLFVVDAMTGQDA 229 (453)
T ss_pred HHHH----HHHCCCCEEEEECCCCHHCCHHHHHHH-HHHHHHHCCCCEEEEEECCCCHHH
T ss_conf 9999----997799999997876012108889999-999876378713797432235668