HHsearch alignment for GI: peg_472 and conserved domain: PRK11034
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional.
Probab=98.76 E-value=1.9e-07 Score=75.08 Aligned_cols=128 Identities=23% Similarity=0.369 Sum_probs=85.1
Q ss_pred CCCHHHHHHHHHHHHHCCC--------CCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH--
Q ss_conf 9284899999999998287--------670620107879888899999999961468777886658789997799997--
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGR--------IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAII-- 70 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~--------~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~-- 70 (369)
T Consensus 460 viGQ~~Ai~~v~~ai~~~raGL~~~~rPigsFlf~GPTGVGKTElak~LA~~L~--~~---lir~D-MSEy~e~hsvsrL 533 (758)
T PRK11034 460 VFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG--IE---LLRFD-MSEYMERHTVSRL 533 (758)
T ss_pred HHCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH--HH---HHCCC-HHHHCCHHHHHHH
T ss_conf 745499999999999998638889999705899978998777999999999986--67---72142-6653120147774
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCC-----------CCCCE
Q ss_conf 7987782224533223345556655544565420465237751156648001678999997212-----------21114
Q 537021.9.peg.4 71 RGNHVDVVELDAASHTSIDDVREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPP-----------PHVKF 139 (369)
Q Consensus 71 ~~~~~d~~e~~~~s~~~id~ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp-----------~~~~f 139 (369)
T Consensus 534 iGaPPGYV--------Gy~eGG~Lte~Vr~~Pys----VvL~DEIEKAhpdV~nilLQvlD~G~LtD~~Gr~vdF~NtiI 601 (758)
T PRK11034 534 IGAPPGYV--------GFDQGGLLTDAVIKHPHA----VLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVL 601 (758)
T ss_pred CCCCCCCC--------CCCCCCCCCHHHHHCCCE----EEEEHHHHHHCHHHHHHHHHHCCCCCCCCCCCCEEECEEEEE
T ss_conf 48998666--------767777012878739877----997336756398999988732377830179999884400199
Q ss_pred EEEECCCC
Q ss_conf 66506754
Q 537021.9.peg.4 140 IFATTEIR 147 (369)
Q Consensus 140 il~t~~~~ 147 (369)
T Consensus 602 ImTS-N~G 608 (758)
T PRK11034 602 VMTT-NAG 608 (758)
T ss_pred EEEC-CCC
T ss_conf 9825-617