HHsearch alignment for GI: peg_472 and conserved domain: PRK11608
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional.
Probab=98.48 E-value=6.9e-07 Score=70.93 Aligned_cols=198 Identities=15% Similarity=0.214 Sum_probs=105.5
Q ss_pred CCCHHHHHHHHHHHHH-CCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCHHHHHHHC---CCCC
Q ss_conf 9284899999999998-28767062010787988889999999996146877788665-87899977999977---9877
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFK-SGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTV-EFEGFGEHCQAIIR---GNHV 75 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~-~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~-~~c~~c~~c~~i~~---~~~~ 75 (369)
T Consensus 8 liG~S~~m~~v~~~~~~~A~~~~pVLI~GE~GtGK~~~Ar~IH~~----S~r~~~pfi~v~C~~l~~-~~~e~~LFG~-- 80 (325)
T PRK11608 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL----SSRWQGPFISLNCAALNE-NLLDSELFGH-- 80 (325)
T ss_pred CEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHC----CCCCCCCCEEEECCCCCH-HHHHHHHCCC--
T ss_conf 858999999999999999688999898898983799999999965----886799977887798997-7889987277--
Q ss_pred CCCCCCCCCCCCHHH-HHHHHHHHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHC-----------CCCCCEEEEE
Q ss_conf 822245332233455-5665554456542046523775115664800167899999721-----------2211146650
Q 537021.9.peg.4 76 DVVELDAASHTSIDD-VREIIDQIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEP-----------PPHVKFIFAT 143 (369)
Q Consensus 76 d~~e~~~~s~~~id~-ir~l~~~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEP-----------p~~~~fil~t 143 (369)
T Consensus 81 ---~~g~~--~~~~~~~~g~l-----e~a~g--GTL~L~eI~~l~~~~Q~~Ll~~l~~~~~~r~g~~~~~~~~~RiIa~t 148 (325)
T PRK11608 81 ---EAGAF--TGAQKRHPGRF-----ERADG--GTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCAT 148 (325)
T ss_pred ---CCCCC--CCCCCCCCCHH-----HCCCC--CEEEEECHHHCCHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEEECC
T ss_conf ---55676--77532468734-----35689--86997374547999999999998649088579987665646887133
Q ss_pred CC-CCCCC------HHHHHHH--HHHHCCCCCC--HHHHH----HHHHHHHHCCC----CCCHHHHHHH-HHCCCCCCCH
Q ss_conf 67-54330------3567543--3321024540--01356----78764310134----5625664456-5316764200
Q 537021.9.peg.4 144 TE-IRKIP------ITVLSRC--QRFDLHRISI--GDLIE----LFTKILQEESI----EFDPEAVAMI-ARASDGSARD 203 (369)
Q Consensus 144 ~~-~~~ll------~TI~SRc--q~~~f~~l~~--~~i~~----~L~~i~~~E~i----~~d~~~l~~i-a~~s~GslR~ 203 (369)
T Consensus 149 ~~~l~~lv~~g~fr~dLy~rL~~~~I~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrE 228 (325)
T PRK11608 149 NADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRE 228 (325)
T ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCHHHH
T ss_conf 22089999839567999856530111586845471019999999999999982999888889999999961999965999
Q ss_pred HHHCCCCCCCHHHC
Q ss_conf 11000111000000
Q 537021.9.peg.4 204 GLSLLDQAIARCND 217 (369)
Q Consensus 204 Al~lLeq~i~~~~~ 217 (369)
T Consensus 229 L~n~ierav~~~~~ 242 (325)
T PRK11608 229 LKNVVERSVYRHGT 242 (325)
T ss_pred HHHHHHHHHHHCCC
T ss_conf 99999999985688