HHsearch alignment for GI: peg_472 and conserved domain: PRK12402
>PRK12402 replication factor C small subunit 2; Reviewed.
Probab=100.00 E-value=0 Score=442.32 Aligned_cols=315 Identities=17% Similarity=0.285 Sum_probs=262.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHC--CCCCCCC
Q ss_conf 92848999999999982876706201078798888999999999614687778866587899977999977--9877822
Q 537021.9.peg.4 1 MIGQKPMIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGFGEHCQAIIR--GNHVDVV 78 (369)
Q Consensus 1 iiGq~~~~~~l~~~~~~~~~~ha~lf~G~~G~GK~~~a~~~A~~l~c~~~~~~~~~~~~c~~c~~c~~i~~--~~~~d~~ 78 (369)
T Consensus 17 vvGq~~i~~~L~~~~~~~~~ph-lLf~GPpG~GKTt~A~~lA~~l~~~~~~~~~~~~nasd~~~~~~~~i~~~~~~~~~~ 95 (337)
T PRK12402 17 ILGQESVVDHLSALAASGNLPH-LVVYGPSGSGKTAAVRALARELYGDPWENNFTYFNVSDFFDQGKKYLVEDPRFAHFY 95 (337)
T ss_pred HCCCHHHHHHHHHHHHCCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCEEECCCCHHHHH
T ss_conf 0397999999999997799876-988892984899999999999679975678333116531135640010166423442
Q ss_pred CCCCCC-CCCHHHHHHHHH-HHHHHHHCCCCCEEEEECHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHH
Q ss_conf 245332-233455566555-445654204652377511566480016789999972122111466506754330356754
Q 537021.9.peg.4 79 ELDAAS-HTSIDDVREIID-QIYYKPISARFRVYIMDEVQMLSTAAFNGLLKTLEEPPPHVKFIFATTEIRKIPITVLSR 156 (369)
Q Consensus 79 e~~~~s-~~~id~ir~l~~-~~~~~p~~~~~kv~iid~a~~m~~~a~NaLLK~lEEPp~~~~fil~t~~~~~ll~TI~SR 156 (369)
T Consensus 96 ~~~~~~~~~~~d~i~~ii~~~a~~~p~~~~~KiiIlDEad~lt~~Aq~aLlk~lEe~~~~~~fIl~t~~~~~ii~tI~SR 175 (337)
T PRK12402 96 DDPKRKYKSVIDNFKHILKEYASMRPLSADYKLILFDNAEALREDAQQALRRIMERYSETCRFIFSTTQPSKLIPPIRSR 175 (337)
T ss_pred CCHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHH
T ss_conf 01533277378999999999861488778804999707131799999999988740887669987238644475247762
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCHHHH
Q ss_conf 33321024540013567876431013456256644565316764200110001110000001210322000135677777
Q 537021.9.peg.4 157 CQRFDLHRISIGDLIELFTKILQEESIEFDPEAVAMIARASDGSARDGLSLLDQAIARCNDKIVTSSVRLMLALADRNRI 236 (369)
Q Consensus 157 cq~~~f~~l~~~~i~~~L~~i~~~E~i~~d~~~l~~ia~~s~GslR~Al~lLeq~i~~~~~~i~~e~v~~llg~~~~~~i 236 (369)
T Consensus 176 C~~i~F~~~s~~~i~~~L~~I~~~E~i~~~~~~l~~ia~~s~GdlR~ain~Lq~~~~~~~~~~~~~~~~~~~~~~~~~~i 255 (337)
T PRK12402 176 CLPLFFRPVPDDEIRSVLESIAAAEGVEISDDGLDLIAYYAEGDLRKAILTLQLAAEAEGEVTTEAALEELSDTGTDETV 255 (337)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHH
T ss_conf 44543589899999999999999849998999999999986998999999999998727997718899998778979999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHH
Q ss_conf 88887630136334678876543-04762135787775348999999745741223449988999999998629989999
Q 537021.9.peg.4 237 MDLFGYLIKGDIINVLQEFSSQY-DSGVNPSVILHDLAEFTHLVTRIKYIPEMADTLLYSEAENARALQYSKEVSITFLS 315 (369)
Q Consensus 237 ~~Ll~ai~~~d~~~al~~l~~l~-~~g~d~~~iL~~Ll~~~rdll~~k~~~~~~~~~~~~~~e~~~i~~~a~~i~~~~L~ 315 (369)
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~il~~l~~~~~~-----------------------------~~~~~~~~ 306 (337)
T PRK12402 256 EEALDAAEAGDFTDARSLLDDLLIDEGLSGREVLRELLEVARR-----------------------------GYSEYNVA 306 (337)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-----------------------------HCCHHHHH
T ss_conf 9999999848999999999998875599999999999999987-----------------------------47868999
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 999999999998302788899999999999
Q 537021.9.peg.4 316 RFWQMILKGISEIEGFSRPMEAVEMVLIRL 345 (369)
Q Consensus 316 ~~lq~l~~a~~~Lk~n~np~L~lE~lLlkL 345 (369)
T Consensus 307 ~i~~~~a~~e~rl~~g~~~~lqL~a~la~i 336 (337)
T PRK12402 307 ELATLAADADARLTDAANERIQLNALLAEL 336 (337)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf 999999999988751799999999999847